Clone Read LE_HBa0041H01_SP6_42960

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041H01_SP6_42960
Primer
SP6
ID from Seq. Facility
LE_HBa_041_H01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
499 trimmed for vector and quality, 800 raw
Genbank Accession
DU059283
Sequence
>LE_HBa0041H01_SP6_42960 (raw untrimmed)
TGGGGGGGCACCTCATTATCGAATTGGAGCTCACTTTGTTAAGAAAGATTTTACGAGCTGGATATTTCTGGATGACTATGGAGAATGATTGTTGCAAGTT
TGTGTAGAAATGTCATAAATGTCAGGTGCACGGTGATTTGATACGAGTGCCACCTCACGAGCTTAATGATATGAGTTCACCTTGGCCATTTGTAGCTTGG
GGAATGGATGTCATAGGTCCGATAGAGCCAGCCGCTTCTAATGGACACTGATTCATTTTGGTTGCCCCATTGATTATATCACCAAGTGGGTGGAAGCAGC
TTCTTACAAGTCGGTAACCAGGAAAGTTTTGTTCATAACAATCTGATATGTAGATTTGGAGGGCTAGAATCCATTATTACTGATAATGGGGCAAATCTCA
ATAGTCACTTTATGAGAGATATATAGGAGAAATTTAAGATTACTCATCGAAATTCAACTGCTTATCGTCCCCAAATGAATGGAGCTGTAGAGGCCGCCAA
TAAGAATATCAAAAATATTTTGAGGAAAATTATTGACAAGCATCGAGGTTGGCCTGAGATGTTACCATATGCTTTATTGGGATACTGCCCTACCGCCCGA
ACATCAACTAGAGCCACTTCCATATTTGCTATTATCCTGAACCGAAGCTGTTATCCCTGGCTGAGGTCGAGATATTGTTTTTCAGAAATCATCCAATAAA
TTTAATTTTTTGTATTTCTTATATGTTGAACCCCAACTCACTTGAACCAACCCAATTCTAACTGCCATTGAAATTAAAGTACTCGTCCGTCCACGCACCA
>LE_HBa0041H01_SP6_42960 (trimmed for quality and cloning vector)
CACTTTGTTAAGAAAGATTTTACGAGCTGGATATTTCTGGATGACTATGGAGAATGATTGTTGCAAGTTTGTGTAGAAATGTCATAAATGTCAGGTGCAC
GGTGATTTGATACGAGTGCCACCTCACGAGCTTAATGATATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATAGGTCCGATAGAGCCAG
CCGCTTCTAATGGACACTGATTCATTTTGGTTGCCCCATTGATTATATCACCAAGTGGGTGGAAGCAGCTTCTTACAAGTCGGTAACCAGGAAAGTTTTG
TTCATAACAATCTGATATGTAGATTTGGAGGGCTAGAATCCATTATTACTGATAATGGGGCAAATCTCAATAGTCACTTTATGAGAGATATATAGGAGAA
ATTTAAGATTACTCATCGAAATTCAACTGCTTATCGTCCCCAAATGAATGGAGCTGTAGAGGCCGCCAATAAGAATATCAAAAATATTTTGAGGAAAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965736
Expected error %
0.18167
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA56791.1| Score 127 E Value 2e-54 Identity 70.10% Align. Length 492bp (98.60%) Frame 3
integrase [Nicotiana tabacum] pir||S47444 probable integrase - common tobacco (fragment)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82037.1| Score 120 E Value 1e-51 Identity 64.90% Align. Length 492bp (98.60%) Frame 3
gag/pol polyprotein [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041H01
Clone
Clone name
hba-41h1
LE_HBa0041H01
P041H01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found