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Clone Read LE_HBa0009J11_T7_4293

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0009J11_T7_4293
Primer
T7
ID from Seq. Facility
LE_HBa_009_J11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
485 trimmed for vector and quality, 946 raw
Sequence
>LE_HBa0009J11_T7_4293 (raw untrimmed)
AACTGGGACCGAGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTTCTCCCTCAACATTTCCAATACCATTAAAGGATGNTNNTNATGTTNNTN
NTTANTTTTAGAGTTCTTAGAAGATCATCAATAAATATGATCACAAAGAGATNCAAGTATGGNTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAG
GGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTG
ATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATG
GTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTA
TAATGAAGCCTTTGTTCAACAACTCTTGAAAGTTGGGCTTTAAACTCCCTAAACTTCGCCGGAACCATTCCATAAAGGGGGGAAAAAAAATGGGGGAAAG
ACCCGGTTCAAAAATCAAAAAAAAAGCAAAATCCCTATTTGGGGGGCATACCGGGAAAAATTTGCTGGGAAACCCTCCCAAAAACCCCCCAAACCCCCCA
AAACCCAATCCTACTCAAGGGTTTTTGGGGTGGGGTGTCCCCTTGAAAAAATTGGCCAAAAAAAAAAAAAAACCCCCTTTTAAAACCTCTTTTTTTATCT
CCAGAAAAAAAAAAGAGAAAAAATAGCCCCCCCGGAGGGGGAGGAGTGTGGGTCCCCCCCCCCCCCCCCCAAAAAGAGAGTTTTTTCCCCGCGGGGTGGG
GGGGAAACGCACCTCCTCCCTTTTTTTTTCTCTTTTCATCATCCCT
>LE_HBa0009J11_T7_4293 (trimmed for quality and cloning vector)
AGCTTTTTCTCCCTCAACATTTCCAATACCATTAAAGGATGNTNNTNATGTTNNTNNTTANTTTTAGAGTTCTTAGAAGATCATCAATAAATATGATCAC
AAAGAGATNCAAGTATGGNTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGC
CCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCAC
CTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACT
CCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
1.019
Expected error %
5.14862
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 238 E Value 6e-62 Identity 26.80% Align. Length 410bp (84.54%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 236 E Value 1e-61 Identity 27.00% Align. Length 410bp (84.54%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0009J11
Clone
Clone name
hba-9j11
LE_HBa0009J11
C12HBa0009J11
P009J11
Clone type
BAC
Contamination
none
Estimated length
106,130
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found