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Clone Read LE_HBa0119K08_T7_41583

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0119K08_T7_41583
Primer
T7
ID from Seq. Facility
LE_HBa_119_K08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
643 trimmed for vector and quality, 911 raw
Genbank Accession
DU060954
Sequence
>LE_HBa0119K08_T7_41583 (raw untrimmed)
TTAAACCGGTTCCCGGGGGATACTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGAGCAAGGCATTGAGAAAACCTTGGTTTATAATTAGAACTACCCTT
TTCCTGACTGACCATGCACTGATGACCAGTCATTTAACAAAAAACGGATGCACAGACATAATTACGGAACAACTCGGACTAATAATAATGGATTCTCTTC
TTCAAAGAAAAAACTAAGGTAAGGAACAGCTCTGTTACTACTTTTAAGGTGTCAAATCAAAATGTGAAAACACTTACTCTGGAGGCATGTATCCAAATGT
ACCCACAAGTCGTGTTTGCAAGGACGAGCTTCCAACTTCAGTCAGTTTCGTTAAACCAAAATCTGCCACCTAAACTCAGACAATTAACACAATACAAAAT
AGCCTCCCACTATAGACAAACAAAAAAAAGGTGCCTTGACAAACCTTTGCATGGAAGTTTTTGTCTATCAGAATATTTGCAGTTTTAATATCGCGATGGA
TGTAAACTGGTACAGTATGTTCATGTATGTACTCAAGACCTCTAGCTGAATCTAGAGCAATTTGAACCCTCTTAGACCATGGCAATGGGTCCCTTCCTGG
AGATAAATTTACCAGATTGAGTAAAAGTTCTTTAAGGAACTAACTATTACTGAGAGATTGTTATTAATTAAATGTGATTTTATTCACATCCAATATACTT
GTACCCCTTCGCATGTTGGCCTTTGTGGTCTATCCTCTATTTATTCATTTACTATAAATATAGAACCTTTTTCACTTTTTCTTTTTCACTTCCCTCTTCT
ACTCCCTATCTATGAATTAACTCGTCTCGGTACGTTACTATTATGTTCACTTCCTGTTTCTTTTTTACTCGCTTCTCCCTTTCTTTTTTTTTATTATCTT
TGTTTTCTTTN
>LE_HBa0119K08_T7_41583 (trimmed for quality and cloning vector)
AGCTTTGAGCAAGGCATTGAGAAAACCTTGGTTTATAATTAGAACTACCCTTTTCCTGACTGACCATGCACTGATGACCAGTCATTTAACAAAAAACGGA
TGCACAGACATAATTACGGAACAACTCGGACTAATAATAATGGATTCTCTTCTTCAAAGAAAAAACTAAGGTAAGGAACAGCTCTGTTACTACTTTTAAG
GTGTCAAATCAAAATGTGAAAACACTTACTCTGGAGGCATGTATCCAAATGTACCCACAAGTCGTGTTTGCAAGGACGAGCTTCCAACTTCAGTCAGTTT
CGTTAAACCAAAATCTGCCACCTAAACTCAGACAATTAACACAATACAAAATAGCCTCCCACTATAGACAAACAAAAAAAAGGTGCCTTGACAAACCTTT
GCATGGAAGTTTTTGTCTATCAGAATATTTGCAGTTTTAATATCGCGATGGATGTAAACTGGTACAGTATGTTCATGTATGTACTCAAGACCTCTAGCTG
AATCTAGAGCAATTTGAACCCTCTTAGACCATGGCAATGGGTCCCTTCCTGGAGATAAATTTACCAGATTGAGTAAAAGTTCTTTAAGGAACTAACTATT
ACTGAGAGATTGTTATTAATTAAATGTGATTTTATTCACATCC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961446
Expected error %
0.504223
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g21630.1 Score 124 E Value 3e-29 Identity 20.30% Align. Length 329bp (51.17%) Frame 2
68416.m02728 protein kinase family protein contains protein kinase domain, Pfam:PF00069
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g51940.1 Score 91 E Value 5e-19 Identity 15.90% Align. Length 320bp (49.77%) Frame 2
68414.m05855 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein contains protein kinases ATP-binding region signature, PROSITE:PS00107
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE02592.1| Score 137 E Value 3e-31 Identity 21.80% Align. Length 320bp (49.77%) Frame 2
Nod-facor receptor 1b [Lotus corniculatus var. japonicus] emb|CAE02590.1| Nod-factor receptor 1b [Lotus corniculatus var. japonicus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE02591.1| Score 137 E Value 3e-31 Identity 21.80% Align. Length 320bp (49.77%) Frame 2
Nod-facor receptor 1a [Lotus corniculatus var. japonicus] emb|CAE02589.1| Nod-factor receptor 1a [Lotus corniculatus var. japonicus]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0119K08
Clone
Clone name
hba-119k8
LE_HBa0119K08
P119K08
Clone type
BAC
Contamination
none
Estimated length
83,955
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found