Clone Read LE_HBa0119J03_T7_41525

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0119J03_T7_41525
Primer
T7
ID from Seq. Facility
LE_HBa_119_J03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
671 trimmed for vector and quality, 878 raw
Genbank Accession
DU060906
Sequence
>LE_HBa0119J03_T7_41525 (raw untrimmed)
TCTGGCTGGGACCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTGGAGTGAATAATCAGTCACTTTATAGGTCTATGGTATGAATAGTT
CTCCAATCCCAACCATTGGCTATTTAAGATGCATGAATGTATATGTATATCATGAGTTTGAATGTAAATATTCAATGTTACATGACTGTGTCATTGATCT
ATTGGAACTGTTTCTTTAATCTCAGATTCAACATGTCTCCTTTTAATCCGATTAGTACTATTTTGGGTCAAAAAGAACTAGAAGGTTCTAACTATGTTGA
CTGGAGGAGAAATCTCGACATTGTGTTAACTGCTGAAGTATATAAGTTTGTGCTTCATGAGGAATGTCCATTGAGACCAAATGGTCAGTCTAGTGATGAG
GATAAGTTAGTTTATCAGAAATGGCGCAAATCTGATGAGATGGAGCGATGCTACATTATGCCTTAAATGTCAAATGTTTTGCAACATCAACATCAAGCTA
TGTTGTCTGCTTTTGAAATTCTGGAGAATCTCAAACAAACGGTTGGAGACAAGTTTCGATCAGCTAAGCAGACTTCCATGATAACTCTCATGAACACAAA
GATGGTTGAAGGCACTACTATAAGAGACCATGTTCTGAATATGATAGGTCTTCTGAATGAACTATAGGTCTTGGAGGCTAACATTGACAATGACTCTCAA
GTTAAGATGATATTGCAGTCTCTGTCTTGCAGTTTTTCCTAAATCATAATATGAATAAGAAGATTCTATCTTCGGTCCTTTTTATAACTGAGGTTCCGGC
GATCAGATACTTCTCCTCATGTTACTTGCCCCCCAATGGAGCCTCTATTGTTAGACAAGTTCCTACTTCTCACCCCAC
>LE_HBa0119J03_T7_41525 (trimmed for quality and cloning vector)
AGCTTGTGGAGTGAATAATCAGTCACTTTATAGGTCTATGGTATGAATAGTTCTCCAATCCCAACCATTGGCTATTTAAGATGCATGAATGTATATGTAT
ATCATGAGTTTGAATGTAAATATTCAATGTTACATGACTGTGTCATTGATCTATTGGAACTGTTTCTTTAATCTCAGATTCAACATGTCTCCTTTTAATC
CGATTAGTACTATTTTGGGTCAAAAAGAACTAGAAGGTTCTAACTATGTTGACTGGAGGAGAAATCTCGACATTGTGTTAACTGCTGAAGTATATAAGTT
TGTGCTTCATGAGGAATGTCCATTGAGACCAAATGGTCAGTCTAGTGATGAGGATAAGTTAGTTTATCAGAAATGGCGCAAATCTGATGAGATGGAGCGA
TGCTACATTATGCCTTAAATGTCAAATGTTTTGCAACATCAACATCAAGCTATGTTGTCTGCTTTTGAAATTCTGGAGAATCTCAAACAAACGGTTGGAG
ACAAGTTTCGATCAGCTAAGCAGACTTCCATGATAACTCTCATGAACACAAAGATGGTTGAAGGCACTACTATAAGAGACCATGTTCTGAATATGATAGG
TCTTCTGAATGAACTATAGGTCTTGGAGGCTAACATTGACAATGACTCTCAAGTTAAGATGATATTGCAGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.957584
Expected error %
0.715781
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90298.1| Score 265 E Value 1e-69 Identity 27.60% Align. Length 485bp (72.28%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP44605.1| Score 71 E Value 3e-11 Identity 10.60% Align. Length 482bp (71.83%) Frame 3
putative polyprotein [Oryza sativa (japonica cultivar-group)] ref|NP_909603.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0119J03
Clone
Clone name
hba-119j3
LE_HBa0119J03
P119J03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found