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Clone Read LE_HBa0118I03_SP6_40708

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0118I03_SP6_40708
Primer
SP6
ID from Seq. Facility
LE_HBa_118_I03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
732 trimmed for vector and quality, 876 raw
Genbank Accession
DU059954
Sequence
>LE_HBa0118I03_SP6_40708 (raw untrimmed)
GCGGCAGAATTTGTTTTGAGCATTTGGTTCTTTATAAGCAGGAAGGAGAATCAAGAAGAATGATAGTTTCAGCATCCGTTTTTCGTAGGAGAATCGGTTA
TGCTATGATAGGGTTGGCATATGATATTTATATAGTTGGAGGGGTTAATGGACCGGATTACTGGAATTGTAGCGTGAAAGTGCTATCTGATGTTGATGTC
TTGACCCTTGGAAGTGAGAGGCCAGCATGGCGTAAGGTTGCTCCATTGACAAGGTGCAGAGGGACAATCCTTGGCTGCACACAGCTGAGAATTTAAGACA
TGCATAAATGGGGATGAAATTCAAATAAATGCTACAACGAACATTTGGCACTAAAGTGGCTGCTAGGAATAGCATGAAGTAGACAAGTGAAGAGGAAAAA
AGCAAATTGAGATTACTAATGGTGGATGATGTTTGAGGGTAAACATGTTCCATGCCTTGCCTTTGTCTCCTTTGTCGTAGACTGAAAATGATGGAAATCC
TATCTGACATGACTTCTATGAGGTGTCTTAGTAGTGATCGACTTTATTTTATTAGTTGTCTAAAAGCTACAGTAAATGAAATCCTGCGCCAGAAACATGG
AAGCAACAAGATGTTCAGCTTCCTTGCTGAGTTCTTGAGTGGAATGAAGTTCACCCTGACTTTGAGAACTGGAGATTTTGACATGATAAAATACATGTAT
TTGCATTAAGGAGCACTATTATTTTGTTTTCCTAGTGTTTTGTAATATGAGATGAATTTAAATGAAGTAATAGGGTCGGATTCATAGTTGACCCTCTCTT
GTTTGAGACTATTGCCTTGTTGGAATTTTTCGTTGCTTTCTTGGAAACTTGAATCCATCCCTTGTCTTTTAAATGC
>LE_HBa0118I03_SP6_40708 (trimmed for quality and cloning vector)
TTTATAAGCAGGAAGGAGAATCAAGAAGAATGATAGTTTCAGCATCCGTTTTTCGTAGGAGAATCGGTTATGCTATGATAGGGTTGGCATATGATATTTA
TATAGTTGGAGGGGTTAATGGACCGGATTACTGGAATTGTAGCGTGAAAGTGCTATCTGATGTTGATGTCTTGACCCTTGGAAGTGAGAGGCCAGCATGG
CGTAAGGTTGCTCCATTGACAAGGTGCAGAGGGACAATCCTTGGCTGCACACAGCTGAGAATTTAAGACATGCATAAATGGGGATGAAATTCAAATAAAT
GCTACAACGAACATTTGGCACTAAAGTGGCTGCTAGGAATAGCATGAAGTAGACAAGTGAAGAGGAAAAAAGCAAATTGAGATTACTAATGGTGGATGAT
GTTTGAGGGTAAACATGTTCCATGCCTTGCCTTTGTCTCCTTTGTCGTAGACTGAAAATGATGGAAATCCTATCTGACATGACTTCTATGAGGTGTCTTA
GTAGTGATCGACTTTATTTTATTAGTTGTCTAAAAGCTACAGTAAATGAAATCCTGCGCCAGAAACATGGAAGCAACAAGATGTTCAGCTTCCTTGCTGA
GTTCTTGAGTGGAATGAAGTTCACCCTGACTTTGAGAACTGGAGATTTTGACATGATAAAATACATGTATTTGCATTAAGGAGCACTATTATTTTGTTTT
CCTAGTGTTTTGTAATATGAGATGAATTTAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962325
Expected error %
0.420886
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g63220.2 Score 119 E Value 2e-27 Identity 21.50% Align. Length 260bp (35.52%) Frame 1
68416.m07103 kelch repeat-containing F-box family protein contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g63220.1 Score 119 E Value 2e-27 Identity 21.50% Align. Length 260bp (35.52%) Frame 1
68416.m07102 kelch repeat-containing F-box family protein contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_974481.1| Score 119 E Value 8e-26 Identity 21.50% Align. Length 260bp (35.52%) Frame 1
kelch repeat-containing F-box family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB86423.1| Score 119 E Value 8e-26 Identity 21.50% Align. Length 260bp (35.52%) Frame 1
putative protein [Arabidopsis thaliana] gb|AAM65263.1| unknown [Arabidopsis thaliana] ref|NP_191881.1| kelch repeat-containing F-box family protein [Arabidopsis thaliana] pir||T48111 hypothetical protein F16M2.70 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0118I03
Clone
Clone name
hba-118i3
LE_HBa0118I03
P118I03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found