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Clone Read LE_HBa0247D07_SP6_406723

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0247D07_SP6_406723
Primer
SP6
ID from Seq. Facility
LE_HBa_247_D07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1021 raw
Sequence
>LE_HBa0247D07_SP6_406723 (raw untrimmed)
TGTCAACATCGGTTGAGTCTAATCTACTTGCGTCCTACGCTAGAAGGTAATCAATCCTTTTAAGGTTTTAGAAGAATTTCTTTTGTAGTTGGGATTCCCC
TTTAAGAGAAACTCGCATTTACTCAGGCACAATGGGCACTCAAATCAAATCCACATTATAGCTAAGAAGAAAGGATCATGCTTTTGAATTACCTTGTGCG
GGACGAACAAATGAGGGAGCGAGAGCTCTATATGTTGGCAAAACAGCTGAGTACAACATACGAAAGTGCAAAGGATCACTTTACAACCTTTAAATGCTTC
AAAACAAGGGGCATAAACTCCTTCAATGAAAAAACAGAAATGTGTGATTACTTATTGTTTTCAGAAGTAATCTTGATAGAATTATGATATAAACGATTTT
TCCCAAAAAAATTATTATAATCAGATTGTACTAAGACAAAAGTTTTTCTTTGTGGTGATTAACACACTTCGGGTTTATTTTACAACCACAAACACTGGTA
AAAATAAATTTGAAAAGACAAGAAATTGAAGATGAAAATAAGCAATGTAATGAATTAGCTTACAAAAAGTGTAAAAAATAAAATAGATAAATCAACATAA
TACCATATATCAAATCAAAAAACCTTTGGAACATTTCTTATAGCAATAACATATTATTAGAAAAATTCACGAGATGATAATTCAAGATGATAATACAATA
GAAGTTTATGATTATAATTATTCTAAAAATAGCGTAAAATATAAAACTAACATCAAACATATAATATGATAAAACATTTTAAGAAAAATATATAAGCATA
AAATTTTCTATTATTCTTAAAAGCAGATTCATCAAAAACAATAGTTACATAAATCTCATATGACACAAAGAACGTCATTTAATACAATTATGTAATCGGA
AACATCCACAGAGAAATAAATACTTAATTAATATAACGATAATGAATGGCATACATACATAAGATAAATAGAGAATTTGTACTTAGTTCGTGACAATGAA
CTATAAAATCTATCAAATCCA
>LE_HBa0247D07_SP6_406723 (trimmed for quality and cloning vector)
AAGGT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.510295
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0247D07
Clone
Clone name
hba-247d7
LE_HBa0247D07
P247D07
Clone type
BAC
Contamination
none
Estimated length
87,325
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found