Clone Read LE_HBa0246N16_SP6_406178

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0246N16_SP6_406178
Primer
SP6
ID from Seq. Facility
LE_HBa_246_N16-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
149 trimmed for vector and quality, 882 raw
Sequence
>LE_HBa0246N16_SP6_406178 (raw untrimmed)
AACAATAAGGGTTTNGTATTATTATTAGAGGTTGTGACTCCTCATAAAAGGGTGTAGTTTTCTAAGAATTAATTTTCGGGGGTTCAAACTGTCACAAAAT
AACCCCTGCTACTTGTTACTGGAGTTAGTAAAAAATCCCCGCAACTTAATTGTGACAAACCTACTTTGCGAGTCATTGAAACCTCTGCTACATCAAACTG
TGGGGGGTTGTACTTCATTCGTAAAGTTGAGCGCGAAAGCAATAGCTCGTTATAACAATAAGGAATCGACTTCTTCTTTTCCTGCATAAAACTCTGTAAC
TCGTAATAAGCAATCTTTGGTCGCACCTACTGCCTTCCACTTAAACGTTTTTTTTTTTTGAAAAAGATTTAACGTTCAAAATTTTGGGGGAGCGCGATAT
AAAGATAGATTTTGAAAAATATGTATTTTAGAGTATATGCCAATATGTAGTGGAATTGAACTATCAACTGCATTAGATTATGACTACTACGACAATATAT
CCATTGTACTCCTATAAAGTGGGGGATTGGGGGATTAAAGAATACTGAAGTTTATTGGCTTATGGTTAAATAAGTAGAGGTATTTATTTTATATCCACAG
ATCAAAGATGAAACATACAGCTTAGAATTAATTGATAAGTAAAAGCCTTCCTTATATTTGGGATATTTAATTCTTCGGTTGTAAAAGTAGTCTCCATTAT
GTATGATCTGTTATGATTATGCAAGCGACATATAACATAAACTGTAAGTCTAATACATCAAATAGTAAATTAAACTAGTGATAAAAATAATTTATTATTT
GTTTTTTTATACCCCAAGTACCCACAATAAATCAACTTATTACATCGAACTAATGGTTTGGATAATAGTGTATTAAATAAAT
>LE_HBa0246N16_SP6_406178 (trimmed for quality and cloning vector)
AGTTTTCTAAGAATTAATTTTCGGGGGTTCAAACTGTCACAAAATAACCCCTGCTACTTGTTACTGGAGTTAGTAAAAAATCCCCGCAACTTAATTGTGA
CAAACCTACTTTGCGAGTCATTGAAACCTCTGCTACATCAAACTGTGGG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.947898
Expected error %
0.46634
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0246N16
Clone
Clone name
hba-246n16
LE_HBa0246N16
P246N16
Clone type
BAC
Contamination
none
Estimated length
98,339
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found