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Clone Read LE_HBa0246N01_SP6_406119

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0246N01_SP6_406119
Primer
SP6
ID from Seq. Facility
LE_HBa_246_N01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 1041 raw
Sequence
>LE_HBa0246N01_SP6_406119 (raw untrimmed)
ACCGTTAGCACTGAGAGTTGNTGAGGCATTCTTCTGAGGACGCAGGTTACGGTTTTCCTGCTTTCATAGTAAACCCTTTTGGGAGAAAGATCTGTATTGA
TCAGATTGTGAACCCTCCTTTTCTGGTTAAATGTATGCTCGCGTGAATGTGAATATGTGAGTGTGATCGGATAAGCGTGATGGACATATCGCATCCCAAA
TCTCGAAAACAAGCTTTGCTATTCAGTATTCGGGATGATGCCTTGCGATAAAAAAATGCTTGACGAATTATACTCCTGGGATTGCTGACGCCTTGGGATT
AGCAATGCGTGTCGAGTTGCAAAACGACAATTCCGGATCGGGTGCTCCATGCCCACACACTAAATTATGGGAACGAGCGTTCCGATCTAACACCTTTAAA
TACGGGCATCGGGGATCACACAGCTTCACCTAAAACTGAGGGATCGGCTGTCGCCAATCAACACCCCTGATTTCGCGATTAGGTGTCGGCAAACTGCGCA
TATTCTTAAGGGATCCGGCGCCAACAATCCACCCTTGCAATTAGGGGGACTTGCGTCACTTACCCAAACGTAGATTTTTTGCGATTTCGGGATCCCGGGC
CCAACACCTTAATTAAGAATATCCGATTGTCACCTTCCAATGCCTACCCTTTTTTGGGTGGGAACGACGAATTGCAAACCCCCTGTTCGTTAAACTGTCA
ACATCCTTTCAAAATCCACTTATACAGCCTTGAGCTTTTTGCCCAATACATGCTCCACTATGGGCTTTTCCACATTCTTTTCGGGAAGACATATGTGTAA
CTTTTTCTCCCCAATCCTGACAATAAAATACCTTGTTCTGGCTGAAAAAATTTCTGCCAGCTTACATCCCCTGAAATCCCTTGTTACTCTTTCCCCTAAC
CCTACAGTAAATTTGCCCCTACAAGGGCATCCCTGTTTCCTTACCGGCTCGCCAATAATTCGAAACCCCCATCTTGGCTTCCCACTATGATAAGAAGTGG
ACAAAACCGCCACCCCAATTGTGTCATTTGCCCAAAGACTN
>LE_HBa0246N01_SP6_406119 (trimmed for quality and cloning vector)
CTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.597918
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0246N01
Clone
Clone name
hba-246n1
LE_HBa0246N01
P246N01
Clone type
BAC
Contamination
none
Estimated length
110,698
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found