Clone Read LE_HBa0246D10_SP6_405224

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0246D10_SP6_405224
Primer
SP6
ID from Seq. Facility
LE_HBa_246_D10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1106 raw
Sequence
>LE_HBa0246D10_SP6_405224 (raw untrimmed)
GACCCTTAAGGAGGGGGNNNNANAAGAGAGGGANNAGANNGAAAAAAGGANAGCAATAAAAGAGGGGGGNNNNAGNNNNNAANANANANNAAAAAAAGGA
AAAGGAGAAGAGGAGGAAAAAGGAGAGAGAGGAGGAAAGAAAGAAAGTTTTTCAAGAAGAGAGAGNNAAGGAGGAGGAAGAGAAAGANGAAAAAGGGGGG
AGGAGGGAGGAGAGAGGAAGAGGAAAGAAGGGGAGGGGGGGAAAAAAGAAGAAGGAAGGGGAGAAAAGGAGAAGGAGGGATAAAGGGGGGAGAGGAGGGG
GGNGGAAAGAGAAAAGAAAAGAAAGAAGGAAAGAGAGAAAGAGAAGGAAAAAGAGGAAAGGGGNAAGAGAGAGAAAAAGGAAAAGAGGGAAGGGGAGAAG
GAAAGAAGGGAAAAGGAGAAAGGAGAGAGGAGTAATATAGGTATATTTTTTTTTAATATGGGGGGGGTGGAATTAGGAGTGTAATTAAATAATGGGAGGG
GTTTGAAAAATAAAATAAGTATAATATTGTGTTGTATGAATTAGAGTAAGATTAATGATTAAGTATTTTATAAATAAAAGGTAAATTTATTAATATATTA
GAATAGAAGGGTGGGGGGGGGGGGGTATTTTTTATAGGAGAATGATATATATTAATGTTATTGGTTAATATATTTATAAATGATTGAATTGTGTATGATA
GAAATAGATAAATTGGTAAATATTATAAGATAAAATAAAATATATTGATTTATGAGAGATTTAATATGAATAGAAGAAAGTTGTATTTATAGATAATTGA
TAAAATTAAAATATAATTATGAGGGAAAAATTATGTAATTGAATTAATAGATAATTATGTTAATTAAAATTTATGTTAATTAATAAAATTGATTAAATAT
AATATTTTTATAATGATGTATGTATAATGGAATGTTTTAATGTATAATGTGTGATAAAAATTAATAGATATATTATGTAAAATATATAAAAGTAATACTA
TATATGATTATTGTAGTTAGAATGATATATAAAAAGAATTTAAAATAATAAAGAAAGTTGAATGATTAATATGTAATTATTAATGAGTTATGTATATATA
TATAAA
>LE_HBa0246D10_SP6_405224 (trimmed for quality and cloning vector)
TTTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.843645
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0246D10
Clone
Clone name
hba-246d10
LE_HBa0246D10
P246D10
Clone type
BAC
Contamination
none
Estimated length
103,343
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found