Clone Read LE_HBa0118B22_SP6_40410

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0118B22_SP6_40410
Primer
SP6
ID from Seq. Facility
LE_HBa_118_B22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
757 trimmed for vector and quality, 801 raw
Genbank Accession
DU059690
Sequence
>LE_HBa0118B22_SP6_40410 (raw untrimmed)
GCGGGGCCTTAGTTTTTTGTTCTGGATGCCCTAAGTCGTATGACTATGGGTAGTGGATCCCACATTGATGAAACCAAGAAACTTTTATGAAGGAAGTTCA
TAGGTTTCTTAGGTTGGGGGTGCCGTTTGAATGTTCTCCGAATGGCTGTTACTATGTTCCATCATAACACCGAGTGATCATTAGTGGTTGAGGTGAATTC
CAAACGATACCTTGATCAACCCTTAAAGGAGTTGAGAGAATCGGTTCTGGAAAAGTTAAATGAGTCTTTTTCCTTAGAATTTGATGGTGTGTTAAGGTAT
CAAAGGGATTGTGTGTTCCCGATGTAGATTGTTTGAGGGACCGGATCCTTGAAGAAACCCATGGGCCCTGCTACTCCAGTTATCCGCGTTTGACAAAAAA
TGTACCATGATCTCAGGGAGATATATTTGTGGGAAGGTTTCAAGAAGGACATAGCGGAGTTTGTCGCTAAGTGTCTTAATTGCCAACATGTAAAAGCTGA
GCATTAAAAGTCGTTTGTCTAACTACATGAGATCCTAATTCATACTTGGAATTGGGATGTCATCAATATGGACTTTTTAGTGGGATTACCTCGGACATAA
AGGTCATATGATTCTTTATGGGTGGTTGTTGATAGGTTGACTAAGTCCGCTCGCTTTATTCCCGTCAAGTCTACTTATAAGGAAGAAGATTATGCTAGGA
TCTTCATAGATGAGATTTTGTGTCGTCAATGTATTCTGTTATCCATCATATAGGATCGAGGTGCACAATTCATGTCACACCCGGGTCCTAGACCCATGAT
G
>LE_HBa0118B22_SP6_40410 (trimmed for quality and cloning vector)
TGTTCTGGATGCCCTAAGTCGTATGACTATGGGTAGTGGATCCCACATTGATGAAACCAAGAAACTTTTATGAAGGAAGTTCATAGGTTTCTTAGGTTGG
GGGTGCCGTTTGAATGTTCTCCGAATGGCTGTTACTATGTTCCATCATAACACCGAGTGATCATTAGTGGTTGAGGTGAATTCCAAACGATACCTTGATC
AACCCTTAAAGGAGTTGAGAGAATCGGTTCTGGAAAAGTTAAATGAGTCTTTTTCCTTAGAATTTGATGGTGTGTTAAGGTATCAAAGGGATTGTGTGTT
CCCGATGTAGATTGTTTGAGGGACCGGATCCTTGAAGAAACCCATGGGCCCTGCTACTCCAGTTATCCGCGTTTGACAAAAAATGTACCATGATCTCAGG
GAGATATATTTGTGGGAAGGTTTCAAGAAGGACATAGCGGAGTTTGTCGCTAAGTGTCTTAATTGCCAACATGTAAAAGCTGAGCATTAAAAGTCGTTTG
TCTAACTACATGAGATCCTAATTCATACTTGGAATTGGGATGTCATCAATATGGACTTTTTAGTGGGATTACCTCGGACATAAAGGTCATATGATTCTTT
ATGGGTGGTTGTTGATAGGTTGACTAAGTCCGCTCGCTTTATTCCCGTCAAGTCTACTTATAAGGAAGAAGATTATGCTAGGATCTTCATAGATGAGATT
TTGTGTCGTCAATGTATTCTGTTATCCATCATATAGGATCGAGGTGCACAATTCATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.968639
Expected error %
0.539768
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 183 E Value 4e-45 Identity 14.30% Align. Length 752bp (99.34%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 182 E Value 8e-45 Identity 14.20% Align. Length 752bp (99.34%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0118B22
Clone
Clone name
hba-118b22
LE_HBa0118B22
P118B22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found