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Clone Read LE_HBa0223O09_SP6_401322

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0223O09_SP6_401322
Primer
SP6
ID from Seq. Facility
LE_HBa_223_O09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2336 raw
Sequence
>LE_HBa0223O09_SP6_401322 (raw untrimmed)
TAGATACTAGAGTCATCTATATNGGTAGCTGTATGCAGCAGACACGACAGAGTGTATAAGTGATGNATTCGATAGACTGTCTGGGATACAATCTATNANA
CATCCGACTCATTATAATGACGGTGGNACTTNTAGTGCATACTAGTACAAGAGTCTACCCCTCCCTACTTCATTCATGTGCGTGNGGGATGGAGCCTGAG
GATAAACNCTAATCGACGATGGTAGTGAAATCATTGTANGAGTCAAGATCGTGCATCATATGTATCGATAGCACACCGACTCTCNCTTCCTACTGATGTG
ATGGTAGTAGTANTGAAGTGTATGCTCAGACTNTATGAGTNTCAGATCTAGATGTACGTACAGTTATTAGGTAATATAGCTTCTCATACTCGTATGCGTC
GAGAGGTACTACAATCTNTGATTATCGCGACGCAAGAGACTGTGTCTCAGCTGCGCTATGAAGACTATNCTAGGTGTGTGCTGCATGGCGACTACTCGAT
ATGCTTATCGAGGTCATATGCGAAGTACTGTTAGTAACATGCATTGATCGTGCAGTCGCTGCGATTATAGTGATCTGTGAACGTCATTGAACTGCTAGTT
CCAGAAGTGTAACCTAGTGTACTCAGCACGTCATGGAGTATAGATCGTGACTCATGNGTAGCCACTCAGCGATATATGCAGATAACTGTGTACACGCTAT
ATGAGCGATCGTATTGGCACTATTTAGAGAGGTAGTGAGTATACATCATATAGCTACTATAAGGCAGACTCTNTGCAAGAGTATGATAATACGAACTGGC
GATGCTGTCGAGGTACTAACATGTGTGAGAGTTGACGACGTATGTCATGAACCAATATACATTGAAATGTATAATGTAACAGCTTCTGCTAAGTGTACTG
TCGAATGAGCAGTTATACTAACATGTTAGGACATGCCTGTGTNGGATATCTATTATGCGCTACTACGTGTGTCCAGTATTTACTCTTGCAGTNGCGAGNA
NAGTACATCTATAAAGGAGTTACATATACTATGGAGAATGCTACCTGCGTAATCTTTGCTGATTACATCAGCTAATACATATCAGAGATTCTAAGCCACA
TCTATGATACAACTGACAGTACTAGTCATTGTGGCATCCTCTGTCATNTATATACTACTNATGCTATGAAATGAGCTATTTGTAATGAGACCAAGACATA
CATGCTGATGTACCGAGANAGCATGACTGCTCTGTGTGTAACGATACTTATATGGTTTCGCATTATCACACTCTGTTGTTACGAACGATGCTATGACATA
TACACGAANATNCTCGGTNACAANGTACTGATGTGAATANGATGGTATTGACTACGTCAATGTATAGACAGCTGTGGATACTACTGATCTGCGACAACGA
CTANACGTGTATAATTTCATACATGTTCATGCTTTCTTACAACACGACGATGATTTACGTNCTCCNTGTACAGTTGATAATATTAGTCAGTGTACATTGT
CATCTGAATCTTGAGCACAGTATGATTGTCGCTACACTCTACTCATNTACATNCATGCCGACTGAATTGAACGTGCATAGTCATGTACGCACACAGAGAC
TCTCTATGCCGTAAATGCACTGTATCTGAGTGGATNCTGATGTCTGTCCGCATAATTCATGACATGGACTGCACACTACTACACTGATTGATCTCACACA
CGTGTTCGCAACATGTGATCACATCTAGCACTCACGCATAATACATTGATGCTGCCTTGAGTATTGAACANGTATGTGGACATTCTATATACTATTCACC
TATACTGCANATACAACGACCTCGCATCTCGCTTATAGCTATACTACANCTCCTAGTTCTNANTGACCGTATCCTATAACATGTTGTCACACATGATNCA
CATGTAGTAATCACTGTAACTGCGCGATGTTCTGACACCACTCACTCGTTCACTATGTCGCATATGATTCGCTGACTGCTATCATCAGTCATATAATCTG
ATGTAGNCTATATGTCGTACATGCACTGCATCGATCTATCTATATCTGATGACAGCCACTTGACTTACTCGTTCTACTCTACTGATGGTCTAGCTCGCTC
ATNTNACTTCACGTCCGCCTGACAGATATGATGAGCATTATCGAGTGCCNTNCATCGCGTCTGAATTGATATCANGTACCTCTGATGTTAACCGCTCTAT
TATGACNCTNTACGATGAACACTTTGACTATCACTTCTCTGCTGAGTAGCGTAGTGCTGCTACATGATGCCCTTGACATTACTAGTCATGTGTACATGAG
TACTAGACATCTCACACTCACTATGTACTACACACN
>LE_HBa0223O09_SP6_401322 (trimmed for quality and cloning vector)
GT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.66038
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0223O09
Clone
Clone name
hba-223o9
LE_HBa0223O09
P223O09
Clone type
BAC
Contamination
none
Estimated length
109,734
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found