Clone Read LE_HBa0223M24_T7_401195

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0223M24_T7_401195
Primer
T7
ID from Seq. Facility
LE_HBa_223_M24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
728 trimmed for vector and quality, 923 raw
Sequence
>LE_HBa0223M24_T7_401195 (raw untrimmed)
TGACGACGGGGACTCTGAGTCGACCTGCAGGCATGCAAGCTTACGACCACTGAACAAATTTGGCTGTCGAACTCAGTTTATGCGCCGCTAATGTAGCGGC
TTTCTGAGCATTTGAAAAACTCACACCATCCATTTCAAATAGGATTTGTCCCTTGTACACAAGAGCAATCCAACCCGTATGATTTGCTTTTCCTCTTCCC
ATTGTTACTTCGTAGGTTTCCCGGTAATAAGGATATTACGATAAATCTTACCATTTATTTGAAATCATCTGCTGACGATGGAAATGACAGATAATAGCAC
GAGGAGCTGCTTCAATGGCTCGATATGAAAGACGACTAGCTCTACAACTTTTAGTGCCATATATTCCAAAACCAAGTTGTTTACCATCCGATTTGCAACC
CCTACTACATCTGCCTTTACGATATTTACTATATTGTTTACGTTTCGGATATAACACGTCCCCCCCATTTTTTTAAGATATGAAATCCATGCTTTGACAC
CTAATATTTCGTAACGAGTAGATACTTTCGCAGGAGCATAATCTATTTTCTTGTTAAATACATTACGAAATGCTTTTCCATATGTTCCCCATTCTGTTAT
AGCTATTTCTGCACCTTCTAATTGACATGAACAACATATATAGATCCCCTCCACCCCCTTTTTTATTATTAATGGAATATCCTTCATTATTTGACTAAAA
ATGGAATGAAATGATCTTGTTTTGTCCCTCGGTTGAAAAGAGATGTCTTGAGCCATTGGAGAAGCACTTTGATAAATAGATTTGAACTTGACCGATTCAA
TTAAAGTATTAGTGTTTGTTCTATTACACAACAAAGATCACACTTTTTCACTTCATTCAAATAATAGTTGTACCCGTACGATTTTTTCTGTTTCCAGTAT
GATCTCTATCATCATCTCTATTC
>LE_HBa0223M24_T7_401195 (trimmed for quality and cloning vector)
CTGCAGGCATGCAAGCTTACGACCACTGAACAAATTTGGCTGTCGAACTCAGTTTATGCGCCGCTAATGTAGCGGCTTTCTGAGCATTTGAAAAACTCAC
ACCATCCATTTCAAATAGGATTTGTCCCTTGTACACAAGAGCAATCCAACCCGTATGATTTGCTTTTCCTCTTCCCATTGTTACTTCGTAGGTTTCCCGG
TAATAAGGATATTACGATAAATCTTACCATTTATTTGAAATCATCTGCTGACGATGGAAATGACAGATAATAGCACGAGGAGCTGCTTCAATGGCTCGAT
ATGAAAGACGACTAGCTCTACAACTTTTAGTGCCATATATTCCAAAACCAAGTTGTTTACCATCCGATTTGCAACCCCTACTACATCTGCCTTTACGATA
TTTACTATATTGTTTACGTTTCGGATATAACACGTCCCCCCCATTTTTTTAAGATATGAAATCCATGCTTTGACACCTAATATTTCGTAACGAGTAGATA
CTTTCGCAGGAGCATAATCTATTTTCTTGTTAAATACATTACGAAATGCTTTTCCATATGTTCCCCATTCTGTTATAGCTATTTCTGCACCTTCTAATTG
ACATGAACAACATATATAGATCCCCTCCACCCCCTTTTTTATTATTAATGGAATATCCTTCATTATTTGACTAAAAATGGAATGAAATGATCTTGTTTTG
TCCCTCGGTTGAAAAGAGATGTCTTGAG

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.961829
Expected error %
0.249026
Sequence Annotations 
Automatic Annotations
Arabidopsis thaliana Mitochondria (screening/organelle/ATH1_mitochondria)NCBI BLAST
mitochondria Score 218 E Value 4e-58 Identity 90.50% Align. Length 711bp (97.66%) Frame 3
No sequence description found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0223M24
Clone
Clone name
hba-223m24
LE_HBa0223M24
P223M24
Clone type
BAC
Contamination
none
Estimated length
97,061
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found