Clone Read LE_HBa0239O16_SP6_400911

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0239O16_SP6_400911
Primer
SP6
ID from Seq. Facility
LE_HBa_239_O16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
672 trimmed for vector and quality, 997 raw
Sequence
>LE_HBa0239O16_SP6_400911 (raw untrimmed)
CACTCGAATTCAGTGAGAAGAAATTGAAATTGATAGGAGTGTTTTTTTCTTCAATGTAGACCTTTATGTAGCTTTACGGTAGATATAATAGTAGCTACTC
CTTATGTACATACATTCCAACGGTAATATTTCATGAAACGACCTCGTGGACCATTAAAAGAATCGATGGGAAAATTCTATTGTAAAACGGGGTAAATATT
TAAGCAAATAACGTTTTGTGACTATAGTTTATCTAATTACGCTTCACGACTATAGTTTAAATGACACATGGAACACCCCTTGTGATTTAGAGCAACTAAT
TCGTTAAGTTGAAGCCAAATATCATCTACGTTTTTTTGTGATGAGTTTAGTTAGGAGGATAAACATTCAAATTGGGTGTATAGAAGTGATTGAAGAATTA
AATTAAAGTTTAAGGTCAAAGGAAGTTTGGTAACAAAAATTCAATTTTGATGGTTTTATTTTGTGGAAGTAATTCAAATGGCCACATATATAGTCTAATT
TTATTGAATTAACTTTCAAAATTCAATAAGATTGGAGATATCAAAAGAAAGGGAGTGTTATTAATTCTTTTATTGTGGATTAATGACGAAAAGATTTTGC
ATGCAGACAGGTCAAGATAAAGTCAGTGGAATGGAGGTATATCTAATAATATGCATCATTGGTTTTACTTCATTGAAAATGTAGGAAATTTAAAATGGAC
AGAATTTTATTTTAAAAAATAAAAAGTGATGTGTATTTTATTTCCCTTTAATGATAATATCACTTTGGTATTTTTGAAGATACATTTTGAATCCTGTTTA
TTCATTTTCATGAAATTTTGAAGGTTGACATTTACTTTTATAACGAAAAATTTTTCCCCTTTAGAAACAAACTTTTTTGATTTGGTTTGAAACAACTTCA
AGAAAAATTAAGCCTTAAAAACCTCATAAGGGTTTTATAAAGGAATGTCCCCTATGCCCCCTCCCGTTGGGGGTTTAATAATTATCACAAAAACCTA
>LE_HBa0239O16_SP6_400911 (trimmed for quality and cloning vector)
ATTGATAGGAGTGTTTTTTTCTTCAATGTAGACCTTTATGTAGCTTTACGGTAGATATAATAGTAGCTACTCCTTATGTACATACATTCCAACGGTAATA
TTTCATGAAACGACCTCGTGGACCATTAAAAGAATCGATGGGAAAATTCTATTGTAAAACGGGGTAAATATTTAAGCAAATAACGTTTTGTGACTATAGT
TTATCTAATTACGCTTCACGACTATAGTTTAAATGACACATGGAACACCCCTTGTGATTTAGAGCAACTAATTCGTTAAGTTGAAGCCAAATATCATCTA
CGTTTTTTTGTGATGAGTTTAGTTAGGAGGATAAACATTCAAATTGGGTGTATAGAAGTGATTGAAGAATTAAATTAAAGTTTAAGGTCAAAGGAAGTTT
GGTAACAAAAATTCAATTTTGATGGTTTTATTTTGTGGAAGTAATTCAAATGGCCACATATATAGTCTAATTTTATTGAATTAACTTTCAAAATTCAATA
AGATTGGAGATATCAAAAGAAAGGGAGTGTTATTAATTCTTTTATTGTGGATTAATGACGAAAAGATTTTGCATGCAGACAGGTCAAGATAAAGTCAGTG
GAATGGAGGTATATCTAATAATATGCATCATTGGTTTTACTTCATTGAAAATGTAGGAAATTTAAAATGGAC

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.933498
Expected error %
0.513038
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 84 E Value 6e-18 Identity 93.10% Align. Length 57bp (8.48%) Frame 1
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0239O16
Clone
Clone name
hba-239o16
LE_HBa0239O16
P239O16
Clone type
BAC
Contamination
none
Estimated length
86,426
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found