Clone Read LE_HBa0221L21_SP6_397987

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0221L21_SP6_397987
Primer
SP6
ID from Seq. Facility
LE_HBa_221_L21-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 966 raw
Sequence
>LE_HBa0221L21_SP6_397987 (raw untrimmed)
NNGGCAGTGCGATTCGTGTTGATGACCACCTGACGGGGAGGTAGGTTAGCGTGCATGATAATCGCAGCCTTTAGAGAGAAGAGAANGATCNAGAAGGAGA
AGGGAAGCCTTTGCAGAGATAAGCTTAATCGTAAGCTGGCTAGATAGTGACCTATATGAGAGAGAGAAAAGACACAGA
ATGAAGCTCTTGAACCACACAT
CCTGGAGGACCCAAACCACTCTGTGCAAGAAGACGCCTTGCTAGTGCATAAGGCTAGATGAACATGGAGAGTTATTTTGGGATCCGGAGCCGCTCTCCGG
GACTTAGAAATTATATGAGGAACGTAGAGAAAAGCCACCTGATGGCTGAGACAATATGGACTCCACGCCGCGGACCGGAACCACGATATAGGGATAGGCT
CGCGAAGTCAAGTCCCATCGCGAGAGGGGAAGACATAATGAATCTTTTAACCTATTAATAGCCTCACAATGATGAGCATTAAGCCCGAGCCACCATTATA
CAGAACCATGAGCCCCACCTGATGTCCTATGGAGTGGCATCATAGCTTCAAGAACCTTGTAAATGCCTAGCCACGAGCACAGTATTTTACTTTTGGATGC
TAGCTGAGATGAACAGAATACTAATGTAAGTGAACTGAAGAGAGCTACGCAACCCTAAAGACCGAACAGACACCTACTTGTGAGTTTCATTCAGAGAGAT
TCCTAGCATGCGGGGAAAGTGACCACACTCGTCACTTTAAACGCAACTCTAATTCACCCTGTATCCAGCCGAAACTTAGGGTGCCCTTAACGCTTACCGG
CCCGGAGGGCATACCTCTTCGGAAAAGTTTTGATTGCCTTAAACTTGCAAGCATGGCACCGCGTTATACTTTAAAAAAAAATTTCGAAAAAACCCACAAA
CTGTTCTCCCTCTGAAAAATACACGGATCATGTCATGAATGACTTCCCGGAACTTCCCGCAAAGAA
>LE_HBa0221L21_SP6_397987 (trimmed for quality and cloning vector)
ATGA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.69369
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0221L21
Clone
Clone name
hba-221l21
LE_HBa0221L21
P221L21
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found