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Clone Read LE_HBa0117A12_SP6_39574

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0117A12_SP6_39574
Primer
SP6
ID from Seq. Facility
LE_HBa_117_A12-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
649 trimmed for vector and quality, 932 raw
Genbank Accession
Sequence
>LE_HBa0117A12_SP6_39574 (raw untrimmed)
CCCGGGTTTTGAGGAATGTCTTCACTTGGTACGTCAACAAGACCTTGACAAATGGCTCGCATGGGAAGACATGGCTCGAGACTTTGTGGAACAATACAAG
TTTAACAAGAAGGTTGACCCTACAATGTCCAATTTGCTCAAAATGAAGAAATTAAGTCATGAATCTTTTGAGGAATATGTCATACAGTGGGGAATGGAAC
CCTCCAAGATACGTCATTTACCGCATGTAGAGGAGTTGGTCCAAACTCTCATCAGGTCACTTGAGGGTATATACTACAAAACCATGTTCTTCACTGATAT
TCAATGTTTCGACAGTGTAATTCGAATTGGAAAAGAGTTAGAATATGACATTCAATCTAGAAGAATTACTTATACAAAAATTCCTCTTCAAGTCCTGAAA
AAAATCATTAGAAGAAAGGAACGAAGATGCATCAACCTATATACCTGCGAAAAAAGGAAATCAATTTTTTGAGCAAATTCGTCCTATTCTTAAGCCTTCC
AACTGATATACCATGGTTTCACGGTATAATTAATACTTTTTCCTTAAGTTTAGTGTGTCAGAAAGCCTTTTTGTGCTAATTTTGATATAAGTTTCTCTTT
GTTTTGCAGAAAATCTGTCCAAAGCTGAATGCGGAGATTTTGAGCCAAAAAAATGCAGAAGAGACCACCTACGGAGCTTATGACGGTCCGTCGTGCCCTG
TGACGGTCCGTAGGTGGCAACATTATGCAGCTGCTTAAGGAAGATGGGGAAATCTGACTAGGTGGGGGATTACCAATCTTGTGACGGTCCGTCATTGCTA
TGAACGGTCTTGTCTGCATGTTTCTCTTGTAGTTCTGAAAATTATCCCATTTCCAATGTTCAAAGGGTGGAAGTATTTTAAACAACAACCCCGTTGGCTC
GAGGTGCTGTATAGCCATGCCTCTTTGTCGTT
>LE_HBa0117A12_SP6_39574 (trimmed for quality and cloning vector)
ACAAGACCTTGACAAATGGCTCGCATGGGAAGACATGGCTCGAGACTTTGTGGAACAATACAAGTTTAACAAGAAGGTTGACCCTACAATGTCCAATTTG
CTCAAAATGAAGAAATTAAGTCATGAATCTTTTGAGGAATATGTCATACAGTGGGGAATGGAACCCTCCAAGATACGTCATTTACCGCATGTAGAGGAGT
TGGTCCAAACTCTCATCAGGTCACTTGAGGGTATATACTACAAAACCATGTTCTTCACTGATATTCAATGTTTCGACAGTGTAATTCGAATTGGAAAAGA
GTTAGAATATGACATTCAATCTAGAAGAATTACTTATACAAAAATTCCTCTTCAAGTCCTGAAAAAAATCATTAGAAGAAAGGAACGAAGATGCATCAAC
CTATATACCTGCGAAAAAAGGAAATCAATTTTTTGAGCAAATTCGTCCTATTCTTAAGCCTTCCAACTGATATACCATGGTTTCACGGTATAATTAATAC
TTTTTCCTTAAGTTTAGTGTGTCAGAAAGCCTTTTTGTGCTAATTTTGATATAAGTTTCTCTTTGTTTTGCAGAAAATCTGTCCAAAGCTGAATGCGGAG
ATTTTGAGCCAAAAAAATGCAGAAGAGACCACCTACGGAGCTTATGACG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960206
Expected error %
0.17569
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 72 E Value 9e-12 Identity 9.70% Align. Length 329bp (50.69%) Frame 3
putative gag polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 71 E Value 3e-11 Identity 9.40% Align. Length 329bp (50.69%) Frame 3
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0117A12
Clone
Clone name
hba-117a12
LE_HBa0117A12
P117A12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found