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Clone Read LE_HBa0115P16_SP6_39534

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0115P16_SP6_39534
Primer
SP6
ID from Seq. Facility
LE_HBa_115_P16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
8 trimmed for vector and quality, 898 raw
Sequence
>LE_HBa0115P16_SP6_39534 (raw untrimmed)
CCCCGGCATGTTCTGACCCAACAAGGCGTCCCATTCGATCGGCTCTACTTATATCTTGCCTCTATGCTTTTCAAGCGTGTATAGACATCAGCAATTACGG
AAAATTTCATTGATTGTAACATCACACTGTCTTTCTAGCGCTATCCCCCACAGGGCTCTCTAGACCCGCTTCCTCCCCCTATCCATGGTCTCCATTAGGT
TAGCAAACTTTACTACGCTCCATCTTGCATCTCTGCAATCTCATGAAACCGACCCGAATACACATTTACTAAACGCTTGCTCCCACCTCGGTTCCTCATC
ATGCTTTTCTTTAGCCGCTGGCATCACCTACCCATCACCATGACCTCTCTAACGCGTTCATGACTTCTCTTCCCTACACATGCCCTCCGACCTATTACTA
CCATATTAAACGTGAGGAGATGTGATCTCCTCTTTTTCCAACAGAACAACCACACCTTAACTCGGATGACGGCCCTCATCTTCATTATCGGTTTCGCCCT
TGCTTCCAACATCCATTTGTTGAAAGACACTGTAAACTTACTATCACACGAGTAGTTGTTGCATACGGTGTCAAAAAAATGCCTGCACCAATGCTGTGGT
GGATACCGTAAAACACCTTCCACTGCTTTTTTAGACACAGAGCCCATGGACTTTAATTGGTCTTCAAATTTTCTCTCCATATTACACCAAGCAACCACCA
AAACATCTTCTTCATCGAAACACCACTTCCCAGGATTTAAACCAATTGGCTCCTTGTGGTTTTGACCCACAGCCGTGTTTGACTTTTGTAGACCAAAGAT
ACAGCCCATCCACTCATACCCTTGTATTAATAATAACTAATAAGATATTAAAAAAACTCCATCCTCTATCTTTTTTACTTCTTTCCCCTCATACCTCC
>LE_HBa0115P16_SP6_39534 (trimmed for quality and cloning vector)
AGCAAACT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.75717
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0115P16
Clone
Clone name
hba-115p16
LE_HBa0115P16
P115P16
Clone type
BAC
Contamination
none
Estimated length
105,615
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found