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Clone Read LE_HBa0235D02_T7_393469

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0235D02_T7_393469
Primer
T7
ID from Seq. Facility
LE_HBa_235_D02-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
18 trimmed for vector and quality, 854 raw
Sequence
>LE_HBa0235D02_T7_393469 (raw untrimmed)
GTCGGGGATCTCTGAGTCGACTGCAGGCATGCAAGCTTAGCCCTGAGAAAGCCGAATGGCCGCAAAAAAATTGATATTGCGAAGATTCAAAATCAAAGCA
GCTTACACGTAACTTTCTCATAAAGACGTACCGGCCTATTTAAAAAGGCAAGTGAGCTCTCGACTTTCTGCGGTGCTACAGTAGCTATTGCAGCTTTTTC
ACCAAGTAGACAAACCTATACCCATGTGGACACCATTCCATCGTAGTCATGTTGTGGATAAATATTTCGAAAACAATCCTCCTCCTGAGACTGATGATCC
TTACCCCGTCATTGTACCTCATCAAAATGGACATATTGAAGATCTCAATATCAAGCTGACTAAGTTGGACAGATCACTGTTAAAGACAAAAATGACATGG
GCGAGCACTTCTAGCATCGATCACAGACCCTTGATCTGAAAAACTTATTCTTTTTGACCTTGAGATCATGTGCGAGGCCTTGGACACTGCGGATAAAAAA
GTTGAGAAAGTTGCAAGCCTACTTGTGGAGTGTGGTATTGAATTCCCATATAAAACCATTGCAAGTGCGCACGCTGCTTTAAGAGCTAGGGAAAGCACTT
CGTCCGTTTCCGGCAAATGGTCATCTGGATCCGGCGAATAAGTTTAGACCTGCTTTAGTCAAAGTTCGAACACAGAATTTGGTATTTAAACAGGTGACTA
GTTCGTAGGGATGATTAAGTTTCGATCTTAATTCTAACTTTTAGCATGCTCTTCATGAAATGGAAAAAGCTTTTGTTATGAGACATCGTAAAAATTTGGG
GCCGTTCCTTTTTTGGGGGCCAATTTAAAAAAAAATGAATTTTTACCCCCCCTT
>LE_HBa0235D02_T7_393469 (trimmed for quality and cloning vector)
CTGCAGGCATGCAAGCTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.730699
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0235D02
Clone
Clone name
hba-235d2
LE_HBa0235D02
P235D02
Clone type
BAC
Contamination
none
Estimated length
79,361
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found