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Clone Read LE_HBa0115K16_T7_39295

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0115K16_T7_39295
Primer
T7
ID from Seq. Facility
LE_HBa_115_K16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
783 trimmed for vector and quality, 879 raw
Genbank Accession
DU085481
Sequence
>LE_HBa0115K16_T7_39295 (raw untrimmed)
TTTGCCTCGGTTCGGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCTCTAAGATACCTAGAATCCACTTCACAACTTTCCAGTGCTCTTTC
CTTGGATTGTCGAGAAATCTGCTGAAAATACCAATTGTGTGAGCAATACCAGGTATGTGCATAACATTGCCTTACATTATACTTTTGACGACGAAGGAAT
ATGTGCCTTTATCCATGCTCTCTTTTTCCTCCCTAGATGTAGGGCACATCTTCTTGCTCAACTTCATATGACCAGCAAGAGGTGTACTAACAGACTTAGT
ATTCTTCATATTGAAGCGCTCCAGTACACGTTCAATGTACTTTTTATGTGAAAAATAATTTTTTCTTTCATCTCTGAGAAGAATTCTTATGCCCAAAATT
GTCTTCGCATGACCTAAGTCTTTCATAGAAAAAGACTTGCAAAACTCTTTTTTTCAGCTTGTCAATCTTGGAAGTATTCTTGCCACAATTAACATACCAT
CCACATACAACTAAAAGGATCATAAAATCATCACCAAAATTTTTATGTACAAATACACAATGATCTGATGAAGTCTTCTTATAGCTTTGCTCCATCATAA
CAGATTTAAACTTCTTGTATCACTGTCTAGGAGCTTGTTTTAGTCTATAGAGACTCTTTTTGAGTTTGCACATAAAATTTTCTTTAACTTCTACTTTGAA
GCCCTCAAGTTATTCCATGTAAATTTTTTCTTCTAGGTCACTATGAAGGAAAATTCTCTTCACATCCATTCTGCTTATTCTCTAAATTAATATTAGCAGC
CAAACCCAGAAATGTACAAATCAAGGATATCTTTATGATAAAAAAAATTTTTCCCAAAGTCAATACCTTCTTTTGACCA
>LE_HBa0115K16_T7_39295 (trimmed for quality and cloning vector)
AGCTTCCTCTAAGATACCTAGAATCCACTTCACAACTTTCCAGTGCTCTTTCCTTGGATTGTCGAGAAATCTGCTGAAAATACCAATTGTGTGAGCAATA
CCAGGTATGTGCATAACATTGCCTTACATTATACTTTTGACGACGAAGGAATATGTGCCTTTATCCATGCTCTCTTTTTCCTCCCTAGATGTAGGGCACA
TCTTCTTGCTCAACTTCATATGACCAGCAAGAGGTGTACTAACAGACTTAGTATTCTTCATATTGAAGCGCTCCAGTACACGTTCAATGTACTTTTTATG
TGAAAAATAATTTTTTCTTTCATCTCTGAGAAGAATTCTTATGCCCAAAATTGTCTTCGCATGACCTAAGTCTTTCATAGAAAAAGACTTGCAAAACTCT
TTTTTTCAGCTTGTCAATCTTGGAAGTATTCTTGCCACAATTAACATACCATCCACATACAACTAAAAGGATCATAAAATCATCACCAAAATTTTTATGT
ACAAATACACAATGATCTGATGAAGTCTTCTTATAGCTTTGCTCCATCATAACAGATTTAAACTTCTTGTATCACTGTCTAGGAGCTTGTTTTAGTCTAT
AGAGACTCTTTTTGAGTTTGCACATAAAATTTTCTTTAACTTCTACTTTGAAGCCCTCAAGTTATTCCATGTAAATTTTTTCTTCTAGGTCACTATGAAG
GAAAATTCTCTTCACATCCATTCTGCTTATTCTCTAAATTAATATTAGCAGCCAAACCCAGAAATGTACAAATCAAGGATATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.94372
Expected error %
0.629704
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 68 E Value 7e-12 Identity 11.20% Align. Length 347bp (44.32%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA32025.1| Score 167 E Value 2e-40 Identity 59.60% Align. Length 720bp (91.95%) Frame 2
unnamed protein product [Nicotiana tabacum] sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Contains: Protease ; Reverse transcriptase ; Endonuclease]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 157 E Value 4e-37 Identity 55.00% Align. Length 720bp (91.95%) Frame 2
hypothetical retrotransposon [Ipomoea batatas]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0115K16
Clone
Clone name
hba-115k16
LE_HBa0115K16
C10HBa0115K16
P115K16
Clone type
BAC
Contamination
none
Estimated length
88,437
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found