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Clone Read LE_HBa0234C10_T7_391802

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0234C10_T7_391802
Primer
T7
ID from Seq. Facility
LE_HBa_234_C10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2875 raw
Sequence
>LE_HBa0234C10_T7_391802 (raw untrimmed)
GTGAGGGTGTCGCTATCTCAGATNGCCGACATAGAACAGAANCCATGTGGCAGAGGACGGGCCGCGTGCCTCGAANAGGAACACAACTAGCACTGCCGTG
CCACGTACNACTTTTACATGTANANATGATACGCGTCGCTGGCTTATACTTATATATATATATGATGTACCGGACCTTTGTCCTATATAGCACACGTCGA
CTACTCGTGTACGATCTGTGGCGAGCAGGATGTCTGCGATGATGAGGGTCGCCACCCGTTGACTTCTCTGCTTCATATTGAAGGAGCGGNGCAGGGCCAG
AAGATCGACCACACTTAGCTCTTATATATATATGAGCCACGCGTCTGTTCTTGTGAACAATGATAACGCGTGTACTAACAACTTATATTATCCTGCTCAA
CTCCACATACTTGACAATGACGGGAGACAAGTGAGATCTCGTATAAGAACGGTGAATGTATATGCTGCACGCTGCTCATNACGATGGCCTNGAAACTATG
TCTGAAAGTACGGGCACAACTCTGGCGAGCGCAGAACGAGACAAGAAATGCATGTGCGGAGAAAGCGCATTGAAGACTCTGAGATGCTCGATAGCAATCA
CACTAATCATAGTGACTAGCGCATCGCGAGACAGACGAGCTCACTGATGTGCACTAGATACTCGACTTAATGTGCCCTACTGACGTGCAACTGCNGCAGC
ACGCGGCCTGTTATACGACACTGATGCGCCCAGATGCACATGCGCGCAACTGCCACTCAGCATACTGCGATCCGCGATGTAACCGCGACAGCGCACATAC
GCGTCATNACGACGCTGTGCTAGGCGAGATCTGTACTATGCGCTACTGGAAGTGCCGCTGGTAGCGAGTCACGCGGGTGCCACGACCAGGCACGACCGAT
ACTCTACAGCTGACTATCTGCACGTGCAGCATACACCGCGGAGCACCGACATTAGGACTGAAGATGCGTCTCTATACAGGCACGTGTCACGCTGCGCGCA
CACTATGATCAAGGAGATGACAGACTCGCAGCTGCTTNCACGATAGCGTGTTCACGTCCGTCTAGCCAAACGACAGCGATATCACGTCCGTCACGTGAAT
GATCAGAGCGAGCAGCATGACTCACACTACAGCAGCACTGACGCGTATGCGTGCGATGATGACTGTACTGACGCCCCATCGCGACCGACGCTACATACAT
ATACAGACTGATAACTCGTCTCACGAGTGCGCGGTGCGAACGCCCCGCATAANANACTCTCCGTACTATGACACCTCGATGCTATCGGANAGACGTCGAG
ATACTGAATGTGTGGACTCTCAACCATGCGCAACAGGCGTACACAATGGATCACGACTAATTGCGATGCATCGATACCACGTATCATCACCTATATGCTA
CGACTGATCGCTGAGACAACATTGTCTGATCGTACGACNAACACGATAAGCGCACGCGAGAGTGCGCTGAGGGATTACACGTNGAATGCTGCACAGCAGC
ACTGATACGTGGATGACTACGAGATTGCGACGTGACGCGAATCTACGAGAGGCGACTAGTGACATGTCATACGTCGAGACATGTAGTACGCAGAGCGCGA
CAGACATCGCTACGTCAAGAATGCATGACTGCGGCGTTCACATGTGATAATCACACACATGGNTACACACATGACACAGTACAGTCGAGCTGCTCGGTAN
GCGAAGTCATTGTCACGACGCGCGATGACACAGAGACGAGGTGGCATGACGTCGAGTGCACACACACATAATTNCGCGCGGAGACTCTGAAGCTTGACGA
TACGCTATACACGATTGTGCCTGCACATGCTGCGAGAATGACGTGCATGCCTGCTNCGACATCGGACGCACGCGAAGNCGTGAAGATGCACGATGCCGAT
GCGGCACATCATATCTGACTCTCGGACATTACCCATGTCTCACTGCGGTATCGAGAGAATATGCTATGTAACGAAGTGCAGTGCNCGCACGATCACGTAC
GCAAGAATGTGCGCACGTGTGCCACGCTGTATATGCGTGACTGCACGNCGCATCTATCGACTACTACCTACGCGGCTGGCATCACTCTGAGGCGAGGTGC
CTTCACAAGCTAGTGGCTACGCGCAGCTCTCGTATGCGGATGCGCTGTCGTGTCAATCTACAGCTAACGCTGANCTGTGTCTCGCACTATGCATCTGGCA
TCGTAACACGACTGAACTCATCTGATATCTGAACGAGCGCACACACTCGCTCAGACGAAGAGCGCAATGCTGATGCATACGCAGACATATGCAGCATCTA
TGATGACATGTGGAGGCTCACACACAGAATACTGTAGACAGAAGAAGACGGTGATCAGTGCAGTGGAGGTATACAGTATTCTANGACACGTGAACGCGCA
TAACCACCGGATATTAGCAAGATGCAATCAGAATGCGACCTACACATGAGTACTATGAGACAAGGCACAACACAGCGAAACGAAGACATGAGAGCGCAGC
TACTGAATGGATGGCACAATGGTTGAACACTTGCACATGAATCGACTGGCTCTGACCCCGAGGTGCACTCACACAATGACACTATCAGACTGCGTATAGT
AACACGCACTACGAANTCGTGTAGAGGACCCACTCGACTGAGACTATCTGCACTGGACAGCTACTTACGGGCGTATTGCGATNAGTACTGCTCGAACTGC
GGTGTTCGCCGACTGCGATGACGTTAACGCATGCGCTCACGTCATGACAGTCAGCAGCATCGTATACATATCTCTCTCTGATCAGTCACTACGCACAGTC
TCGATTCAGCATGCTACAACACCGACTGCCGNGCTGCAGTACATGGACACACAGCTCTGTCGGTACAGCCGCAAG
>LE_HBa0234C10_T7_391802 (trimmed for quality and cloning vector)
AC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.25059
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0234C10
Clone
Clone name
hba-234c10
LE_HBa0234C10
C10HBa0234C10
P234C10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found