Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0009B14_SP6_3914

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0009B14_SP6_3914
Primer
SP6
ID from Seq. Facility
LE_HBa_009_B14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
681 trimmed for vector and quality, 822 raw
Genbank Accession
DU023968
Sequence
>LE_HBa0009B14_SP6_3914 (raw untrimmed)
CCCACCCGAGAAAGGGAAATAATNCNGAGGTCGCGCGCAAGCTAGGCCCGAACATCATTGTTTAGATTTTTTTTTCAAATGGTATATTTCCATTATTTTT
CACGAGTATATTCTGTCGAAAGTCCATGCTAAAGGATGGACCTTATGTATAAACCATGTGGTCCGATAGTTCATGATGAAGTTGTCAATACTGTTCTGCA
CGAGTTGGTTATCAAAAAAAAAAAAATTACTGTTGTCAATGAGTTTCTCACACTGGTTACTAGAGAGGAATTGTTTATTACTTCAGAAACTTACATCCAA
CTTTTCTCAGGTACACCCATCCTATAGATAGCCGGGAATGCCCCGTTGTCGTTGGTGGTGATTACATTACAACAGAGTCAGGAACTGGATTAGTTCATAC
TGCACCTGGTCATGGACAAGAAGATTATGTAACCGGCTTGAAATACGGTTTGCCTTTAGTTTCCCCTGTTGACGATGATGGGAAATTTACAGAAGAAGCT
GGACAATTTAGGGGGCTTGATGTGCTTGGCAATGGCAATGTTGCTGTTATTGATTACTTGGATGAACACCTGTCATTGGTCATGGTAGAGCCATACAGTA
AGTGTTTTTTTCAGTGCCTATTCCGGATGTCTGCAACCTATAAGTCTCGTGTGATTTATTAAATATTGTTGATATGATTTCTGAATCTAATCCTTGTTTT
TTTCTTCTAATAAATAAATGTTGTGCAGAACACAAATATCCTTATGACTGGAGAAAAAAAAACCCCACTTATATTCAGGGCTACTGAACAATGGTTTGCA
TCAGTGGAAGGGATTTGTTGAT
>LE_HBa0009B14_SP6_3914 (trimmed for quality and cloning vector)
GCGCAAGCTAGGCCCGAACATCATTGTTTAGATTTTTTTTTCAAATGGTATATTTCCATTATTTTTCACGAGTATATTCTGTCGAAAGTCCATGCTAAAG
GATGGACCTTATGTATAAACCATGTGGTCCGATAGTTCATGATGAAGTTGTCAATACTGTTCTGCACGAGTTGGTTATCAAAAAAAAAAAAATTACTGTT
GTCAATGAGTTTCTCACACTGGTTACTAGAGAGGAATTGTTTATTACTTCAGAAACTTACATCCAACTTTTCTCAGGTACACCCATCCTATAGATAGCCG
GGAATGCCCCGTTGTCGTTGGTGGTGATTACATTACAACAGAGTCAGGAACTGGATTAGTTCATACTGCACCTGGTCATGGACAAGAAGATTATGTAACC
GGCTTGAAATACGGTTTGCCTTTAGTTTCCCCTGTTGACGATGATGGGAAATTTACAGAAGAAGCTGGACAATTTAGGGGGCTTGATGTGCTTGGCAATG
GCAATGTTGCTGTTATTGATTACTTGGATGAACACCTGTCATTGGTCATGGTAGAGCCATACAGTAAGTGTTTTTTTCAGTGCCTATTCCGGATGTCTGC
AACCTATAAGTCTCGTGTGATTTATTAAATATTGTTGATATGATTTCTGAATCTAATCCTTGTTTTTTTCTTCTAATAAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962415
Expected error %
0.127831
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g49030.1 Score 179 E Value 1e-45 Identity 28.20% Align. Length 290bp (42.58%) Frame 3
68418.m06067 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P41972 Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) {Staphylococcus aureus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN13174.1| Score 179 E Value 4e-44 Identity 28.20% Align. Length 290bp (42.58%) Frame 3
putative isoleucyl-tRNA synthetase [Arabidopsis thaliana] gb|AAL87306.1| putative isoleucyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_199714.2| tRNA synthetase class I (I, L, M and V) family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10327.1| Score 179 E Value 4e-44 Identity 28.20% Align. Length 290bp (42.58%) Frame 3
isoleucyl-tRNA synthetase [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0009B14
Clone
Clone name
hba-9b14
LE_HBa0009B14
P009B14
Clone type
BAC
Contamination
none
Estimated length
119,187
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found