Clone Read LE_HBa0233J24_SP6_390974

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0233J24_SP6_390974
Primer
SP6
ID from Seq. Facility
LE_HBa_233_J24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1287 raw
Sequence
>LE_HBa0233J24_SP6_390974 (raw untrimmed)
TCCTCTCATAAAAAAAAGAAAGGGGNTTNNNTNTNTTTTTTTTGTGAGGGGGGANNNAANANANNNNNNNANAAATAANNAANATATCCAATNAACNTTT
TTATCTCATATACTAATACTACATTATTAATATATTTTTTCTTCCCCAAGAAGAGGGGAGAGANCATACNANGNNAATTTCTTTAATAAATTACCCAATA
CTTCCGCGAACTCTACATTTGATTACACTATATCTTTTAAACGCAGATTTATACCGGGGGTTAATCTTTCAGCACGCATGCCTATGTCCTATTATACACT
GTACTCTATATAATCACACTCTTACTACGCATTGCCATTATCTTCATAATGTTCTTACTAACGATACTTTCCAAATACTAGTAACTGTATCGCAATTCAG
TAATCTATTTATATGACATTATATCTGCTAAACTCTCAGCTTATAGTGTATTCTACAATTATCTATTTCATTGTCTATCAACCTACTACCTACTTTTTCA
ACCTCCATATATAATGCCATACACGATCTTTCCAACTGTTACTATAATATGAATGTAATATCATCACTTTACTATTATGGAGAATTACATCTAATCAATT
CTCATAAGTTCTATAATTATCACTGACATATTACCTACTAACCTCTTATTCTTTTGCACCTTATCCACTTATCTCATTATACTCTACACNCACTACCCAC
ACATCTCTATTGCTTCAACTTATCAACCTCAATTCTAATCTTTATAACCAGCTCTCCTTCATTAAAATTTATGCTAATAAACTAACTACAATTACCAACT
TGTTATTCTTGTCGCTTATTGCTATTACAACGAATTAATTAACTACCACTCATGATTAATACAAAATCATTATCTCTACATTTCTAAACATTATAACATC
AAATTCTACTTCTCATTTCCATTCATAATTACTACACTACACTACATTCACTTCCATCTCCTAACTTATTCTCTTCTATACTACATCCCCCTCACCATTG
AACAATTCTACTTCTTCACCTACATCATACCTCTCTATCCACATAATTTAACCTCCATGCCTTACCTANTAACTTATTTATAATGTAATATTACATACTC
CATCCATTCTAACAATAATTCATCTGCACTCACAACTCTCTATCAACATCCTACATCTTCCACTAATTCACTTCCCACTCCTCAAGCATGTCATCATCAT
ACAATAACATCCCTTCTTCTTCACTCATCACATATTTATCATATCATTCACTCTTCTCACGAATACCATTTATTCATCCATGTTCAA
>LE_HBa0233J24_SP6_390974 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.692409
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0233J24
Clone
Clone name
hba-233j24
LE_HBa0233J24
P233J24
Clone type
BAC
Contamination
none
Estimated length
83,990
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found