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Clone Read LE_HBa0114P24_SP6_38782

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0114P24_SP6_38782
Primer
SP6
ID from Seq. Facility
LE_HBa_114_P24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
570 trimmed for vector and quality, 683 raw
Sequence
>LE_HBa0114P24_SP6_38782 (raw untrimmed)
GAAAATAGGGAAATATGCTTAGAAGTTTTGAGGTCATTGCGACTTTATAAGGCTAATTCCCAATAAATATCAGGTATCTGTAATTCTTATAAAACCTGGA
TTTAGGTATTGAAAGTGTATAATCTGGTAACCTTTAGCATGTTAAGACATTCAGCAATTTCATTATTGTGCCGCTAGGCAACTCATCCATTTCATGTTCT
ACCATTTCTACAAAGAAACCCTAGGTTTTGGCATCCGAGTAAAAGGAGATCTTTTTCCTAAAATTCCCCTTTCCTTCACTTGATATCATACTTCGACTCA
TGAATACTCACTTCAGACTGCTTCGTCCATCTCATTATTAATTCATTGTTAAAACAAAGAAAATATAAGATTTTTTAATAAATCTTGTTGCATAGGTTTA
CGATGTGTAACTAAATAAAAATTATAAAATAAGCGAAGTGATTTTCCTTTCAGTTGATTTTATTCAACAATTGACCAAAATATGAATAATTTATAAATAA
ATAAATAATAAATTGCATGAACTTAGATCAATCAGATAAAGATTTTTGTAACCATATGATTCTGCCTAATCAATTCATCCATTTAGGTTTAAAGAGAGAA
TTTGTTAGAAAATTTTCATAATATTAAGCTGACGCACTTTCTCGTCGTTTGTCAAGTAGATTAAGCTTTTGAAATCCGAGGGA
>LE_HBa0114P24_SP6_38782 (trimmed for quality and cloning vector)
CTAATTCCCAATAAATATCAGGTATCTGTAATTCTTATAAAACCTGGATTTAGGTATTGAAAGTGTATAATCTGGTAACCTTTAGCATGTTAAGACATTC
AGCAATTTCATTATTGTGCCGCTAGGCAACTCATCCATTTCATGTTCTACCATTTCTACAAAGAAACCCTAGGTTTTGGCATCCGAGTAAAAGGAGATCT
TTTTCCTAAAATTCCCCTTTCCTTCACTTGATATCATACTTCGACTCATGAATACTCACTTCAGACTGCTTCGTCCATCTCATTATTAATTCATTGTTAA
AACAAAGAAAATATAAGATTTTTTAATAAATCTTGTTGCATAGGTTTACGATGTGTAACTAAATAAAAATTATAAAATAAGCGAAGTGATTTTCCTTTCA
GTTGATTTTATTCAACAATTGACCAAAATATGAATAATTTATAAATAAATAAATAATAAATTGCATGAACTTAGATCAATCAGATAAAGATTTTTGTAAC
CATATGATTCTGCCTAATCAATTCATCCATTTAGGTTTAAAGAGAGAATTTGTTAGAAAATTTTCATAAT

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.912568
Expected error %
0.363393
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 159 E Value 1e-40 Identity 94.60% Align. Length 110bp (19.30%) Frame 1
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0114P24
Clone
Clone name
hba-114p24
LE_HBa0114P24
C03HBa0114P24
P114P24
Clone type
BAC
Contamination
none
Estimated length
102,396
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found