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Clone Read LE_HBa0114O13_T7_38713

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0114O13_T7_38713
Primer
T7
ID from Seq. Facility
LE_HBa_114_O13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
604 trimmed for vector and quality, 768 raw
Sequence
>LE_HBa0114O13_T7_38713 (raw untrimmed)
CTGGGTCCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTTAAATGCTCTTCATGTTCCTTC
TTGCTCTTTGAGTATACCAATATATCATCGATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAACGCAGCAG
GGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTTTTTGGCACATCCATTGCCCGTATTTTCAATTG
ATGATAACTGGATCTCAAGTCAATCTTAGAAAAGACATAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGGTACTTGTTCTTTATG
GTTACCTTGTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCT
AATGAAGCCTTTGTTCAATAAATGTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCAGTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCC
AGTCTGAGATCAATACAGAATTCAATATCCCTGTCCGGTGGCATACCAGGAAGATCCCGCCCCCCCCCCATTCAGAAACCTCCGAACTACTGAAAACTGA
CTTTTTCAAATGTACTTTTGTCCCCGCCCCCTTGAAATGGGTCAAGAAAGTGTATGATCTGATTTATT
>LE_HBa0114O13_T7_38713 (trimmed for quality and cloning vector)
AGCTTTTTCTCCCTTAACATTTCCAATACCATTCTTAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCGATAAATACGATCA
CGAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATG
CCCATACCTCGTTCGAAAAGCAGTTTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAAAAGACATAAGCA
CCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGGTACTTGTTCTTTATGGTTACCTTGTTAGTTGTCTGTAGTCTATACACATTCGAAAACT
CCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAAATGTTGAAGTTGTGCCTTTAAC
TCTCTTAACTCCGCGGGAGCCAGTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCAGTCTGAGATCAATACAGAATTCAATATCCCTGTCCGGTGGCA
TACC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.97156
Expected error %
0.819354
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 204 E Value 1e-81 Identity 76.20% Align. Length 601bp (99.50%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 204 E Value 5e-82 Identity 76.20% Align. Length 601bp (99.50%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0114O13
Clone
Clone name
hba-114o13
LE_HBa0114O13
C06HBa0114O13
P114O13
Clone type
BAC
Contamination
none
Estimated length
86,576
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found