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Clone Read LE_HBa0114M14_SP6_38618

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0114M14_SP6_38618
Primer
SP6
ID from Seq. Facility
LE_HBa_114_M14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
697 trimmed for vector and quality, 778 raw
Sequence
>LE_HBa0114M14_SP6_38618 (raw untrimmed)
GTTTTTGGGGGAAACAACGTTGCTGCAGTATCACTATTCTTTGCATAGATAGAGGAGGAGATGTGTGTCCCACGAATTCAATATGTTTTGTGAAAAAAAT
GGCATCCATGGACAGTTAACAACTCCTTATACCCCGGAGCATAATTGTGTCGCTGAATGGAAGAAGGGAAGTTAACAACTCCTTATACCCGGAGCATAAT
TGTGTCGCTGAATGGAAGAACTGTACTGTGGTGGAGAGTGCAAGGAACATATTACAAGGGAAGGAACTCGCAAATCAGTTTGGGGCAGAACTTGTGGCAG
CATCTATATACTTTCTGAATCTTTCAGTACCAAAAGCTTTATGAATAAAACTCCGTATGAATATTGGCATTGTAGGAAACCAAATGTATGTCACTGATGG
ATTTTTCAATGTGTTGCTTATGCGTTGGTAAACTCACAAGATTGTCAAAAGCTCGACAAGAAATCTGAATATTATACTCAATCCAAATCATATAGATTGA
ATAATCCTCTTAATGAAAAGATATCAGTTAGAAGTGATGTAATAATTGATGAAAATACAATCTAGGAATGTAGTAAAAAGTTTGTTTGACAAGAGATTTC
TATGCCTTTTTAAATCACAGAAGAAGAATAAAAAGGGTCAACCTTTGCAAGTTGAGTTTCAGGTTCTTCCATGGAGTTACCAACCTCACTGATTTAAGCT
ACTCATGAAAAGTCTTTAGATGGGATAGTTCCATTAAGAAGATTACCAAGGCTTAAAACGGTAAATCCAATTATGCTA
>LE_HBa0114M14_SP6_38618 (trimmed for quality and cloning vector)
GTTGCTGCAGTATCACTATTCTTTGCATAGATAGAGGAGGAGATGTGTGTCCCACGAATTCAATATGTTTTGTGAAAAAAATGGCATCCATGGACAGTTA
ACAACTCCTTATACCCCGGAGCATAATTGTGTCGCTGAATGGAAGAAGGGAAGTTAACAACTCCTTATACCCGGAGCATAATTGTGTCGCTGAATGGAAG
AACTGTACTGTGGTGGAGAGTGCAAGGAACATATTACAAGGGAAGGAACTCGCAAATCAGTTTGGGGCAGAACTTGTGGCAGCATCTATATACTTTCTGA
ATCTTTCAGTACCAAAAGCTTTATGAATAAAACTCCGTATGAATATTGGCATTGTAGGAAACCAAATGTATGTCACTGATGGATTTTTCAATGTGTTGCT
TATGCGTTGGTAAACTCACAAGATTGTCAAAAGCTCGACAAGAAATCTGAATATTATACTCAATCCAAATCATATAGATTGAATAATCCTCTTAATGAAA
AGATATCAGTTAGAAGTGATGTAATAATTGATGAAAATACAATCTAGGAATGTAGTAAAAAGTTTGTTTGACAAGAGATTTCTATGCCTTTTTAAATCAC
AGAAGAAGAATAAAAAGGGTCAACCTTTGCAAGTTGAGTTTCAGGTTCTTCCATGGAGTTACCAACCTCACTGATTTAAGCTACTCATGAAAAGTCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962191
Expected error %
0.176788
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38758.1| Score 104 E Value 2e-21 Identity 12.80% Align. Length 491bp (70.44%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF79483.1| Score 96 E Value 7e-19 Identity 12.50% Align. Length 488bp (70.01%) Frame 3
F1L3.20 [Arabidopsis thaliana] pir||D86311 protein F1L3.20 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0114M14
Clone
Clone name
hba-114m14
LE_HBa0114M14
P114M14
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found