Clone Read LE_HBa0009A10_SP6_3858

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0009A10_SP6_3858
Primer
SP6
ID from Seq. Facility
LE_HBa_009_A10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
683 trimmed for vector and quality, 863 raw
Genbank Accession
DU023923
Sequence
>LE_HBa0009A10_SP6_3858 (raw untrimmed)
CCCCCCAGTTAAAGGTTTGGGCCTTTGTCACCTGAGTTTGTCTGCAGTTCATCCTGTTTTCCATGTCTCTATGCTTCGGAAGTATATTTCGAATGAATAT
TATGTTCTTTCACTTGACTCTGTGGAGTTTTGTCCAGACTTGACATTTGAGGAGGAGCCTATAGCTATTTTGGATAGGCAAGTTCGAAAGCTAAGGACCA
TAGAGATTGCTTTAGTGAAGGTGCAATGGAAGCACCGATCACTGGGAGAGGCAACTTGGGAGACTGAGTCTGACATGCGTGCCAGATATCCTCAACATTT
TGAAGATTCAGGTACTTCCTATTACTTTATGTTCGAGGAAGAACATGGTTCTTAGTGGTGGATAATATAATGACCCGAAAGGTCATTTTTGATAATTTTA
AACATTTATGTATAGTTACTTAATTTACAGTAATTTATTTACAATCAAAAATAAGGGACAAAATGTGAAATGTTAAAATAGGTGGTAGAAATTATCACTT
TTAATCGATATAATAAATTTAGGGAAAAAAAGTGGAACAGAACTAACCTAAACGTGTGACAAAAACAAACAACATGATAATGTCTAGAAAACACTCACAG
CGCCGTCGAACAAGTGCACTTGATTCAGGTAATAATTTTAAACTTTACATTGAGGCGGATGAATGTGTCTTGTAATTAATGTATTATTATAATTTTTATT
TTAACTTTCATATGTGCTTTTGGATTGTGAAACACGGCAAAATGTATATGGAATAAAGAAATAATAATTGGAAGTTTGGCTTCTGGGTAGAAAGAATTTT
TGAAATTGAAAGAAAGGGTCTTGGCAATCATGGTGATATTTTTTGGGGAATTAACTGAAAAAA
>LE_HBa0009A10_SP6_3858 (trimmed for quality and cloning vector)
TTTGTCTGCAGTTCATCCTGTTTTCCATGTCTCTATGCTTCGGAAGTATATTTCGAATGAATATTATGTTCTTTCACTTGACTCTGTGGAGTTTTGTCCA
GACTTGACATTTGAGGAGGAGCCTATAGCTATTTTGGATAGGCAAGTTCGAAAGCTAAGGACCATAGAGATTGCTTTAGTGAAGGTGCAATGGAAGCACC
GATCACTGGGAGAGGCAACTTGGGAGACTGAGTCTGACATGCGTGCCAGATATCCTCAACATTTTGAAGATTCAGGTACTTCCTATTACTTTATGTTCGA
GGAAGAACATGGTTCTTAGTGGTGGATAATATAATGACCCGAAAGGTCATTTTTGATAATTTTAAACATTTATGTATAGTTACTTAATTTACAGTAATTT
ATTTACAATCAAAAATAAGGGACAAAATGTGAAATGTTAAAATAGGTGGTAGAAATTATCACTTTTAATCGATATAATAAATTTAGGGAAAAAAAGTGGA
ACAGAACTAACCTAAACGTGTGACAAAAACAAACAACATGATAATGTCTAGAAAACACTCACAGCGCCGTCGAACAAGTGCACTTGATTCAGGTAATAAT
TTTAAACTTTACATTGAGGCGGATGAATGTGTCTTGTAATTAATGTATTATTATAATTTTTATTTTAACTTTCATATGTGCTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953243
Expected error %
0.234388
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 118 E Value 2e-25 Identity 20.10% Align. Length 278bp (40.70%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 116 E Value 6e-25 Identity 20.10% Align. Length 278bp (40.70%) Frame 3
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0009A10
Clone
Clone name
hba-9a10
LE_HBa0009A10
P009A10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found