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Clone Read LE_HBa0220E21_SP6_384457

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0220E21_SP6_384457
Primer
SP6
ID from Seq. Facility
LE_HBa_220_E21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 995 raw
Sequence
>LE_HBa0220E21_SP6_384457 (raw untrimmed)
NNNAAGCTGTAACGGCTGGTACGGTCCGGATTCCGGGATTGACTCGCGTTTGCGCAGCTTGCTCGGACTATAATTCACATGTTGGCTTCCCAAACACAAC
CTTTTCATTTTTCGGTTCAAATAACTTCCGACGTTGAAAGCACCGTCCTGCCACGTGCATAACATCGCGGTACAGGACTCAGGCGACTCATGAAGCCCCC
TGAACGAGCCCTAGATCGAGACGCTTCGACCTCAAGTTCCTCGAAAAAAGCTTATTCCATTTCAACATTTTGCCAGCTGAGGGACTATGAATCGGACCGT
GTATTTGGACCACAAAGGCGACCATTTTAGACTATGATGTGCGGGCTAGAAACTTCCCATATCGCGTGGATCGAGACAAACGCCAGAAATACCGGTCTCA
ATCTCGACGACAACGAGATAACTGAGCCCGACCATCGACAAATTATTGTCCTTCGCGTGATTCTACCCCAACTGGTTCGGCAACTCGTGTTCTAGCAGCA
CATGCTCATCCCCCAGGACGCCTTTCTCCATGCAGGCTCACATCGGATGATCCAGAATACGCTCTATCCCACAACTATTACCCCGTGAGGCTTGTGACTG
ACGTCGCTCCTTCGAGACTATTTGTAACATGTCACTATGACATTCTGCAATACTAAATGAACGAGACCGCTGAAATCCTATACGTGCGCAAGCTCAGTGG
GTTATGCATGATGCTGGCGTTTTTGGCGCAGCACCAAAATGTGCATCTAAGATGAGGCTACAGCCCCTGGTCAAATTTTCCTTGTACGAATTAGATTCCA
AACACAAGGAAATTTCCATTTCCAAAAGCCGGCCCGGGTTTTGTCTTTATGCGGATCTTATTTCAACAAGAGGCACTTGCATGACGGATTGGACCCCAGG
TTGGAAAAAATCCCCGACTGGGTTACACAAAAATGGAAAATTTCTCTCCAAGAATAAAAAGGGTGGGTTTCGCCCCTCCAAAAATTTTCTTTGTA
>LE_HBa0220E21_SP6_384457 (trimmed for quality and cloning vector)
CCGGGA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.2359
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0220E21
Clone
Clone name
hba-220e21
LE_HBa0220E21
C02HBa0220E21
P220E21
Clone type
BAC
Contamination
none
Estimated length
122,283
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found