Clone Read LE_HBa0232J20_SP6_383396

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0232J20_SP6_383396
Primer
SP6
ID from Seq. Facility
LE_HBa_232_J20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
78 trimmed for vector and quality, 1005 raw
Sequence
>LE_HBa0232J20_SP6_383396 (raw untrimmed)
CCCCGGCGATCTGGGGAGGATGCTTGAGAGACCTGTTAGCTATAGGGTGCTATTTGTCTAGAAGGAGCACATTAGAAGCCCTCTTACATTATAGGGTCCT
AGCTATTCAGAAACGAGCACAGACTTTGGATACATTGTGAATTTACCCACTTTTTTTGCGTAGGAAGATGACAGTCTCACATGAATTCTAATGTCTGGTT
TAGTTAAAAATAAATGAAAAGATTAATTTCTGAAGTTTAATTCTTGACCTTCAGCTATTTTGCTTGATTATGATGTTTGTATACATTATAATGCTTGCTT
GAAACAAGAGGGGGATGATCATTTATAGAGTGATGACTTTTCACTATAGAATGTTTCAATGATCTGCTATGCGATGAGTCCTTGTGTTTTTCCTCTTAAT
AGGCAATTAC
TGGATATGGATCTGTCAGGAAATTTGTCACCGGAGCTTGCTCGCTTATCTTACATGACAATATTGTAAGTTTGGATATTTAACCAATGCT
ATTCTATTCTAAATAATTTCTGCTTTGGAATTTTTTCCCACTAATAGCTTCTGTTAAAATCTTAGTAGGAAAAGGAATAGTATATAGAATCCTATTCATA
ATAGGAATACGAAGCCTTGTTGGAAACTGAGTCCAATATAGGGTCTATGATAGGGTCTCTATGTCATAATATGGACACACGATTTGATAACATTGCTTTT
CGGCATATTTCTCATATGGTATCAGATCCTTTTTTGAGAAACTTGTATTAAACAGTCCACTGTTGCCGTCTTTTTCCGGAGAACTGCCAGACATGGTTTT
CGGAACTATTGCGGAAAAAATCCAATCTTGACAAGTTCTTTGGGCCCCCATTTTCTGAAGTACAGTCGGGGGCTGGAATACACACCGGCCTTTTTCCTAT
TAGTTTTTGAGGCATATCTTTTCCCCGTAAAGGCCGTGGAACACCCTTTTTGAAACCCACCCCACAAAAAATCCCTTTTCTTGGTATTTCCTTTCCCAAA
ATTTG
>LE_HBa0232J20_SP6_383396 (trimmed for quality and cloning vector)
TGGATATGGATCTGTCAGGAAATTTGTCACCGGAGCTTGCTCGCTTATCTTACATGACAATATTGTAAGTTTGGATAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.922384
Expected error %
0.966167
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0232J20
Clone
Clone name
hba-232j20
LE_HBa0232J20
C10HBa0232J20
P232J20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found