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Clone Read LE_HBa0240C22_SP6_377529

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0240C22_SP6_377529
Primer
SP6
ID from Seq. Facility
LE_HBa_240_C22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 2494 raw
Sequence
>LE_HBa0240C22_SP6_377529 (raw untrimmed)
AGCGCGAAGAGATGTCGGCGCAATTGACTGCCGTNTACTGTGATTCGATAATTTGACACATCAGAACAGAATGTAGGAGTCTAGCCACACGCACCCACCT
ATACTGAGGANGAGGAGGGAATNCGTATGACTGAGAAATATACGGTATGACGANATGNTGTNATTCTATACGAGCTCTGCCCCNACATCTACATNAGAGC
GAGANTGTNTCTGCACANGTATGCTACTCTATACGAGGACACAGCNAGTAATNGTCAAAGTGACGCNCATCTAGATGATAAACACGGCAGAGAGCGAGCA
ATCGCNCGTACATGCAGCTGGCGATGGAACATAGACAGTCGCAGCTGTTATTCTTCTACTATACTACATTCGATGGTGGATCAACACGCTACAGAAAGTC
ATGTCACGCAGGTGAACTAATACCAGACACCTGATACGTCACTGCATACGAGGTCGATGAGATAAAATACTGATCAGATCAATACCATAAACAATATGAC
ATCGAAGTATTGACTTAGGCATACTATGAATGGCAAGCACATACACAATATAGTGATTATAGCGAGATATGTGATGCAACACAACTAAGGCGGCGCATAA
TGCGCTATACCACGAGCTGCAAGACGCAGACGAGAANCGTCGGAGAGATGAGTCTAAAACTGTGATATCAACGGACTATAGATGAGAAGAAGATTGATGC
ATTACAATAATCTAATCGGAAATACGATATCTGTCGCCACGCTCGGACACTANGTTATGTTCACAATGAGATGACGAAGTATGACNANGCGAAACACGAC
GAGGTGAAGTAGATATANATGTGNAAGATGGCTGTATGACAGATGTGACAGCCGAATATCTGTTGCAGATATAGACAGATGCTGCTGACGATTAGACTGT
ACAGACCGCTAGTGAAATACACGACATCGGTAGCATGAACGATGAGAGATTATACGTAAAGAGATGGCGTGGCTGGGCGGATGCTATAGAGACACACAAT
AGCCACTCGATCGGCGTTTAGCTTTATATGTATATAGATGATCNCNCCTCACCACCTTCATCCGACACGGATGAGTACGCACATATACTAGGNGCAATGT
ATCGGAGCTCACTATCGACGTAGACGTCAAGACATGAGACAACAAGAGCGACGTGCACGAAGTAGACACATCGAGATGACATGGCGATNCTGATGAGCGN
CACTGCTGTCGTCATACATACTATCTATGNCATCANCGTATGTATTNTACTCTGTGATAGCATGACGACCGCTGATGAATNAGTATCGATAGCAGTGACG
TGACGAGATGACCTGCAGACGAACTGCGTANTGATGCANACTACTNCGACGATGTGAGACATGCTGACAGACAGTCAATACACCATCTGCATGACTACGA
CGGAGTGCANANCATACANACTGATACGTGTCTANCATCATACAGCNTCACNGTCATCGATACTGCTGTAACGCNATAGNANGAGCNANCAGATCTATGC
ACCTATACTGATGTGTCTNGTTCGTACTGCTGGACCTAGCANATAGTNGCTAGATGAGCTGACNACGCTGTAGCTATCACGTGAGCGTACATGCNANANT
GGTGGGAGAATCGGATCGACAAGTGCACTCAGAGACTGCATATAGACGTATACATGCAACANCAGCNGATCANCTGTCAACTGAATCGTCATACGNGANG
GCGATAGACATACATTGCGTGAAANANGTCATTGACTATCACGGATGTGGACTATGAGATCTGTGATGGAATAGCACTTGTCTCGATGCTAAGATTAAGC
AAACATNACGTAGCCTACGTACGATGCAATGACGTCGNCTCTACAGATGCATCAATACGATGCGATGCATGAGCGTCTNATCACGAGCANCTGACACTGT
TGCGAGACGATCTGTGCTGCACATAGNANAGCATAGATGNCGGNCNTNCNTNCAGATGCCTNGACTACAGCACGANCTNGAGCGNTAATCTCATGTACAG
CNGCACATGCGNGACTCGATCAGCATACTACGCTCANAGATCAGCTCATGACGTCGATCTCGCATGCAACACACGCTGGAGANTACACTGTANCAGAGCT
GATGATATNGAGCACATCATGAAGCCTGANGACTGTANGACNTANACGNCATGCTGANGNCGCGCATGACGATGACAGAATGACNANGAGCATNCAANGA
TCATAGTNGAATGAGCANAGTACANGCCAGCATGATGNTCATACTANCNCATGACACATACAGATCGACTCGTNATTCTGACGAGATCATCTCGTCACAA
GTCGTNCGTCGCGTAATGATACATAGACGCGACGACGCGCGATGCANAGAGACTGGTNCAGAGCACGACTANTGTGTTGACCGTGATNAGCATGCTGGTG
AACTAGNATCTCTATNANCGCTCACTCTGANTTAGTNGCGATCGNGCTACACGATGATCTCTNGTCGTATGATATCGACGTTGCGANGCGCGAG
>LE_HBa0240C22_SP6_377529 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0240C22
Clone
Clone name
hba-240c22
LE_HBa0240C22
P240C22
Clone type
BAC
Contamination
none
Estimated length
100,107
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found