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Clone Read LE_HBa0208I18_SP6_371141

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0208I18_SP6_371141
Primer
SP6
ID from Seq. Facility
LE_HBa_208_I18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
81 trimmed for vector and quality, 1064 raw
Sequence
>LE_HBa0208I18_SP6_371141 (raw untrimmed)
NCCACGGGTAATNNTNNNANTTTTTTCTGGATTTTCTTTTTGTTAGAAGGTTAAAGATTGGATTATCCCCCTAATGAGGAGGAGGATAAAAGGATATACG
TTATAAGTAGACCTGAAAAGGGGCCAGAAATAGGAGAACTACGGTAAAAGTTCACAAGTGGCATTGGAAGATGAAGCATTTCCTACTGAAGAAGTAAGTC
AATCTCTTGCTAATGGAATAGGCAACTATTCAGGAAAATCAAGAGATACAAGTCCAACGTGTAAAGTTTCAACAGTGATGGTGCTTGAAATAGAAGGTTC
CAGTTGAAATCCTCTGCAAGAGGGAAGTTAACTTTCAAATATTTATGACACATGTACCTTTGCTTTATTCGGTGCAGACGCATCTAGTTACCAAGAAGCT
TAAAATAAAATGGAATGGAGGTGTGCTCTGTAAGAAGAAATTATGGAAATAAGAGAAAATGAGACATGGGACTAGGTGGACCTTCCAGAAGGAAAACATT
TAAATAGGTGTTCAAGACAGAACATCACCCGGATCTGAGCTAGCGGAAACCTCAAGCTACATTGGCTGCCAAAGAGATATTCACACCACTAAGGTATTGC
ACCTGCACGAAGTTTTACCGCACTTGATATTTTTACACTTTGAGAAATCCGTTAACCTTCGAGCGGGACAATCGAATTTCAAGGGTTTCCCATTATTGAT
TTGAGTCTGCAATTCTGCGATCGTGCAATGAAAAACACTGACGTTTTATAACCTGGTGGCTTACGGGGGGTAAGGGAATCAAGCACCCCATACTCTTGGA
TAAAGCTAAAACACTTATTGGGGTCACACACAAGACTTCCTTGTCGCGGGCTAAACTATTAATCCCCCTGCCTTATGTGAACAAAAAGGCATTTCCCAGG
ATTCAACAAAAACTATACCCAACTGGGAAAACTCATAAATAAACTGCACTCCTGCGGGGAGAATGGTCTCTTGTCTCAAACATAGATTAATTTATGATAA
ATCTCTCCCTTTCACCATCTGCCTCTAGCCTCCCGTCTCTTCTAATCTTTACTGTCGACGATAG
>LE_HBa0208I18_SP6_371141 (trimmed for quality and cloning vector)
CATTGGAAGATGAAGCATTTCCTACTGAAGAAGTAAGTCAATCTCTTGCTAATGGAATAGGCAACTATTCAGGAAAATCAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.885886
Expected error %
1.07332
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0208I18
Clone
Clone name
hba-208i18
LE_HBa0208I18
P208I18
Clone type
BAC
Contamination
none
Estimated length
95,852
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found