Clone Read LE_HBa0112N03_SP6_37108

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0112N03_SP6_37108
Primer
SP6
ID from Seq. Facility
LE_HBa_112_N03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
462 trimmed for vector and quality, 886 raw
Genbank Accession
DU086737
Sequence
>LE_HBa0112N03_SP6_37108 (raw untrimmed)
AAAAGAACCTCCTAAGAGAGCCATAGAATGGTGCGGTTGGAAATGATCCATACAAATGGTTTGGGGACCATCTCCAGTATCGTCTCTTGAAGGATCTTGA
TTCGATGTTAACTTCATTGATGATTTCACCAGGAAGGTATGGTTTACTTCATGAAGAATAAGTCAAATGTGTTTTCAACTTTCAAGAGGTGGAAAGCTGA
AGTTGAGAATTAAACCGGTTTGAATATCAAATGCCTAAGGTCTGACAATGGAGGAGAGTATGACAAATCAGAGTTTAAGGCATTTTATGCAGTATAGGGA
ATCAGATTGATGAGAATAGTTCCTTGTAAGGCAAGGCAGAATGGAGTTGCTAAGAGGATTAACAGAACATTGAATGAGCATGCAAGGAGTATGAGGACAC
ACTGTGGGCTGCCCAAAACACTTTGGCAGGAAGCTGTGAGCACTGCTGGATACATGATCAATAGGGGATCATCAGTTCCTTTAGGGTTCAAGATTCCATA
AGAGGTGTTGGCACGAAAAGAACTCAAATACTCAAATTTAATGTTGCACTATTTGCGTCTAGTCTTTTAATCTATAATAAACAATACTCTGATATAATAA
TAGATATATCCTAACCCTCGTTGGAAGTTTATATCGCTTGCTTTTATCCATCATTAGTGATGCAATTATATCCCAAACAGCTCGGATACACTACATTATA
AAGCTCCATCAGCATATTCAATAATCTGAGGTCTCGTGTACGACTTTTCTCCTTATCAGACTCCTGTTTAAGGGGAGGCCAGCGCAAATATGAGTCCTGC
GATAGTCTGCGCGGTTGATCGGTATCACGATTATCTGCGGTGATTTTTCTCGCGCGCGCTAACTCCTAACCCCCACTGACAAGGCT
>LE_HBa0112N03_SP6_37108 (trimmed for quality and cloning vector)
GCGGTTGGAAATGATCCATACAAATGGTTTGGGGACCATCTCCAGTATCGTCTCTTGAAGGATCTTGATTCGATGTTAACTTCATTGATGATTTCACCAG
GAAGGTATGGTTTACTTCATGAAGAATAAGTCAAATGTGTTTTCAACTTTCAAGAGGTGGAAAGCTGAAGTTGAGAATTAAACCGGTTTGAATATCAAAT
GCCTAAGGTCTGACAATGGAGGAGAGTATGACAAATCAGAGTTTAAGGCATTTTATGCAGTATAGGGAATCAGATTGATGAGAATAGTTCCTTGTAAGGC
AAGGCAGAATGGAGTTGCTAAGAGGATTAACAGAACATTGAATGAGCATGCAAGGAGTATGAGGACACACTGTGGGCTGCCCAAAACACTTTGGCAGGAA
GCTGTGAGCACTGCTGGATACATGATCAATAGGGGATCATCAGTTCCTTTAGGGTTCAAGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953642
Expected error %
0.196848
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA32025.1| Score 112 E Value 3e-24 Identity 16.80% Align. Length 350bp (75.76%) Frame 3
unnamed protein product [Nicotiana tabacum] sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Contains: Protease ; Reverse transcriptase ; Endonuclease]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD34493.1| Score 108 E Value 2e-26 Identity 49.60% Align. Length 433bp (93.72%) Frame 1
Gag-Pol [Ipomoea batatas]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0112N03
Clone
Clone name
hba-112n3
LE_HBa0112N03
P112N03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found