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Clone Read LE_HBa0112G05_SP6_36776

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0112G05_SP6_36776
Primer
SP6
ID from Seq. Facility
LE_HBa_112_G05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1392 raw
Sequence
>LE_HBa0112G05_SP6_36776 (raw untrimmed)
CGGATACACACACANTCCANANATATNATCTTGTCGAGCTAGTCTGCCATCCTCACCTGACTGACTACACGGATGATCTCGGCACTGCGTGTGAGTATCA
TCTTNGACCTGCAGCATAGCGCCCACCCAGAGATGACTCAGTCATATACGGAGCATCGCGNACACGCGATTATCACATACTGCGCACGCACGCTACTGAN
CANCGCAGCNATCATAAAANACCTCGAGAGTCTGCAGCAGCTGTGTTGCAGAGAGACGCATATCACAGCTGAGACNCGACGATCAGATACACTCTGATCT
GCTNAGCTGACCCNAGCATGCTACATGACATTCGGTGAGATCTATCGNGGCNAGGCTATCGGCNAGCAGTATATGGTAGCGTCAGCCAGGACTGTGATCT
ATANCGGTATAAGTGAAGAGAGANTGTNCGGNGNTCACATCGCGCTACTGTGATGGTATTGACNGATAGCGATGGATATGCNCACANTGCTGTGATATAG
CATAGTACGAATACGACATCCTATNGTACTGNGATGCAGACCATACAGTTAACTCTGACATTGTGGTGATGCNCGGACATCGAGACTATGATCAGACTAC
CACATACGACATANCTGCCTCTGCNGGCGACGCACAGCGTAAGGATCAGTAAGCGTGACTATGTAAACTCACTATANTGTTGTGACTGTNATAGATNACT
CACATGATGTGATGACNTATGAGTATGGNATCTCTNGATATGCATNTAGTCCGTAGTGTCTNCTCGATACTTCTCACTCTGCTCTCTATAGATGTGCTNA
CCTACTGTNTATCNTGCGACGCCTCTCTCGTCCACGTACCACATCGCAATAGTNTNATACATGAGACTACANCGCATAGAGAACACTGNAACCACAGATA
CGTTGTGTACTATCTGACATCACCATCTCGTCAAANCGTGTCGNTGTCTCACGTATGCGACTCGTGATGACAATGTCGGTGAGCAGTGACGGTAGTNGAT
ACGCTNGANGGTGGGTGATTGTTNGTTACATGNTCTCGANTTATATAGCATCTGTTATATNATGTCATCGCTNCATCACAGAGTGACTTACAGGCTNCAT
ATCTTACAGNCTCTATAAGCATATCACACATGACTACATTATCATATGTGCGCTTCGCACCACTCATTGCTGANTAANACCTTGCNACTGCGCGCAGGTG
CGTGGNCACATAGCACGTGAAGCTCGCGTCCGCGTACTTGCAGTAGCGTCTGCGATCTACATCGATCATATATTATGGTGCTNCTCTACTNGGATGACGT
ACTGACAGACTCTCTATACTTGCTATACAACAACATACATAACAGTCGCGACAAACATAGATCACACGNACCANATACGAGAATNCACTATA
>LE_HBa0112G05_SP6_36776 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0112G05
Clone
Clone name
hba-112g5
LE_HBa0112G05
C06HBa0112G05
P112G05
Clone type
BAC
Contamination
none
Estimated length
108,763
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found