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Clone Read LE_HBa0111D09_SP6_35872

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0111D09_SP6_35872
Primer
SP6
ID from Seq. Facility
LE_HBa_111_D09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
122 trimmed for vector and quality, 890 raw
Sequence
>LE_HBa0111D09_SP6_35872 (raw untrimmed)
TTTTTCTCCGTCCTCCGGCGATTTAACTTGCCCTTCTGAGTTAATTTTTGTCACACGAGAATACATATATGAAAATCCCTTCACAAATTTCCTATAATAG
ACAACCAAGCCCAAGGAAACTCCTTATATCTATTGGAGATGTAGGTGTAGGAAACTCTGAACTGCCTCTATCTTCCGAATGTCAACTCTAATCCCTTCAC
CAGAAACAACGTGCGCCCAAGAATGCCACAAATATAACCCAAAAGTTACACTTATAGAACTTGGCGTAAAACTCCTTATCTCTCAAAGTCTAAAGAACAC
ATCCTAAGGTGACTAGTATGATCTTCTTCATTCCCTTGAATAGATTAATATGTCATCTATTAAAATGACGACTATCAAATCTCATTAATCGTCGAACACT
ACGTTCATATCGTCCATTAACGCTGTAGAAGCATTCGTCCCACTCATTCGACATAACCATACGTTCTTAATGTCTACCTCTTGCCATTAAATGTTCGTCT
GTGCCCTCTTTTTACTTCCTTCACTTCCTCCCTTTGCTCCTCTTCTTATTAGTTCTTCGTAAATTATTCTCTCTTACTTGAAGCTTATTTATTTTATTTT
CCTCTTTCTCTTACAATAATTATTTTCACCTCTTTCATCGTCTCTCTTCCTCTTTTTCTTACCGTTCGCTTATCTCTACATTCTTAATGTAGTTTCCTCT
TCTGCTCTTCTGTATTTTTTATCCTCATCGCCTTTTCCCGATGCCTCTATTTATCTTTTCCACTACTACCCTCCTATCATCTATCACTTCTCCTCTCCTC
TTCTATCACCTCCTCCTATTCGCAATCCCTCTATTTCCCCTAGTTTTTCGCACCTCGTTCTTTTCTCTCTTGTTTTTATCGGAAACGCTA
>LE_HBa0111D09_SP6_35872 (trimmed for quality and cloning vector)
CAAATTTCCTATAATAGACAACCAAGCCCAAGGAAACTCCTTATATCTATTGGAGATGTAGGTGTAGGAAACTCTGAACTGCCTCTATCTTCCGAATGTC
AACTCTAATCCCTTCACCAGAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.918086
Expected error %
0.910938
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0111D09
Clone
Clone name
hba-111d9
LE_HBa0111D09
C10HBa0111D09
P111D09
Clone type
BAC
Contamination
none
Estimated length
147,211
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found