Clone Read LE_HBa0110K24_SP6_35470

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0110K24_SP6_35470
Primer
SP6
ID from Seq. Facility
LE_HBa_110_K24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
475 trimmed for vector and quality, 820 raw
Sequence
>LE_HBa0110K24_SP6_35470 (raw untrimmed)
CTTTTTTGGGCTCTGCGTACACCCTTTAGAACGACTATGCAAGCGACTCATTTTTCATTGGTGTATGGCGCCTTTGCAGTCCTTTCATAGGAGAAGCAAA
TTTCATCATTGCCCTTAGGAGTCCAAGAGGGACTTACAACTGAAAGCAATGCTCAACTTCGTCTAGCAGAGCTGGAGGCATTGGATGAAAAGAGACTGGA
AGCACAACAAAGGTCGGAGTGTTATCAAGCTCGACTTAAAAGAGCATTCAACAAGAAAGTGCGACCTTGATCGTATCAAGTGGGAGATTTGGTCTTAGCA
GTCCGGAGACCCATAATCCTCAACAAATGCATTGGTGAAAAGTTTACATCAAAAAGGGATGGACCATTTGTTGTGAAGGAGGCACTTTCAAGTGGAGCTT
ATAAAATTATCTTTTTTTATGTGTAAGAGTTAGTCCAATCAACGCCAAGTTCCTGAAGCAATACTTTCCATGTTGGATGGCTATGCTCCTTAAGGTATGA
TCATTAAACTTCATGCTACTCCTGGACCGTAAGAGTATAAATTGTATAGTCCCCAAAAAAACAAAATAAATAAAACTCATCATCTTGAACTACTATATGA
TTTGATCCTCTTCTCCTTAGTATGTATGGCTCTTGGAGTAATCACTCCTGTAGTATATGTTAAATGATAAAATAGGTTTGTGTGGCCCTTGTTTGATTCA
TCACATGCACCCTCTTAACCTTACTTTTTTTCATCCCGTAACATTAGTTTCCACTTGTGCGTACTTGACGTCTCTATATTATGAATGCTTTTTTCTTAAT
TTCCTAACTTCCTCACTTTG
>LE_HBa0110K24_SP6_35470 (trimmed for quality and cloning vector)
TTAGAACGACTATGCAAGCGACTCATTTTTCATTGGTGTATGGCGCCTTTGCAGTCCTTTCATAGGAGAAGCAAATTTCATCATTGCCCTTAGGAGTCCA
AGAGGGACTTACAACTGAAAGCAATGCTCAACTTCGTCTAGCAGAGCTGGAGGCATTGGATGAAAAGAGACTGGAAGCACAACAAAGGTCGGAGTGTTAT
CAAGCTCGACTTAAAAGAGCATTCAACAAGAAAGTGCGACCTTGATCGTATCAAGTGGGAGATTTGGTCTTAGCAGTCCGGAGACCCATAATCCTCAACA
AATGCATTGGTGAAAAGTTTACATCAAAAAGGGATGGACCATTTGTTGTGAAGGAGGCACTTTCAAGTGGAGCTTATAAAATTATCTTTTTTTATGTGTA
AGAGTTAGTCCAATCAACGCCAAGTTCCTGAAGCAATACTTTCCATGTTGGATGGCTATGCTCCTTAAGGTATGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970353
Expected error %
1.18386
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_493776.1| Score 102 E Value 5e-22 Identity 42.20% Align. Length 439bp (92.42%) Frame 1
unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj|BAB08213.2| Similar to Arabidopsis thaliana chromosome II BAC F26H6; putative retroelement pol polyprotein (AC006920) [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82037.1| Score 84 E Value 1e-15 Identity 14.20% Align. Length 371bp (78.11%) Frame 1
gag/pol polyprotein [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0110K24
Clone
Clone name
hba-110k24
LE_HBa0110K24
P110K24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found