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Clone Read LE_HBa0110I06_SP6_35338

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0110I06_SP6_35338
Primer
SP6
ID from Seq. Facility
LE_HBa_110_I06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
699 trimmed for vector and quality, 829 raw
Sequence
>LE_HBa0110I06_SP6_35338 (raw untrimmed)
GGTTTCCCGAGCCTGATGGCAAGCAATCCCTGTAACAACCTGGTTCAATACCCATTTAATTAAACAATAACAGAATACCAACCCAATACTGAAGAGAAAA
GCAAACTGTCCTGCCCCTTAAATGAAGGGCAGAATCAAAACTTCAGATATAAAAACAGAACAGGATTTCACATAATGAGTCTTCAGATTCTTTTAGACAG
AATAATCACCTTTTGGTGCCCTTCAAGTGTTGTCAACAATGTGAAGCAGTCCCCAGTAGTCCATGAATGCAAATACCTACAGGTGTTTCCATATGTACAA
TTCCCTTTAACCCAATAATTACAAACTTTTTCAGTCTTCCTCACAACTGCACCTCCGCCAGCCGCAGTTCTCCCCCATGTATTGTTAAAATTCGGATTTC
TCCGCATTCCCGAACCTCGATTATCATCAGAAAACCCATGAGGCCGCTTCGACGACGACATTCCATTCCCCGCCGCATGTTGCTGCTGCTGTGGCGGTCC
CGGTAATTCTCTATGTAAGAACGGACATGGAAACCTGTTACATCTTCCAGCCCTCCAATGAAAACAAACTTTTTGCTGTTTATTATTACTGGTGTCCCCT
TGTGAAGAAGGGCCTAGCCGCTGGAACACACGCTTGCTTCCATCCATTTCCATTACCTTCTGTAATCTTGAATGGTCAAGCCTGCTTTCTCTCTTTTAAT
TTGCAAGTTTTCTCTAGCTTCTGAAATAATCTTTGGGAGACAACCCCAGTGATATTTGAAAATCCGAGCTTCTGGATATGATCAGTGGGATGCCAACCCA
GTTGACCTTAAAACAAGCGAATAGGGGTT
>LE_HBa0110I06_SP6_35338 (trimmed for quality and cloning vector)
CTGATGGCAAGCAATCCCTGTAACAACCTGGTTCAATACCCATTTAATTAAACAATAACAGAATACCAACCCAATACTGAAGAGAAAAGCAAACTGTCCT
GCCCCTTAAATGAAGGGCAGAATCAAAACTTCAGATATAAAAACAGAACAGGATTTCACATAATGAGTCTTCAGATTCTTTTAGACAGAATAATCACCTT
TTGGTGCCCTTCAAGTGTTGTCAACAATGTGAAGCAGTCCCCAGTAGTCCATGAATGCAAATACCTACAGGTGTTTCCATATGTACAATTCCCTTTAACC
CAATAATTACAAACTTTTTCAGTCTTCCTCACAACTGCACCTCCGCCAGCCGCAGTTCTCCCCCATGTATTGTTAAAATTCGGATTTCTCCGCATTCCCG
AACCTCGATTATCATCAGAAAACCCATGAGGCCGCTTCGACGACGACATTCCATTCCCCGCCGCATGTTGCTGCTGCTGTGGCGGTCCCGGTAATTCTCT
ATGTAAGAACGGACATGGAAACCTGTTACATCTTCCAGCCCTCCAATGAAAACAAACTTTTTGCTGTTTATTATTACTGGTGTCCCCTTGTGAAGAAGGG
CCTAGCCGCTGGAACACACGCTTGCTTCCATCCATTTCCATTACCTTCTGTAATCTTGAATGGTCAAGCCTGCTTTCTCTCTTTTAATTTGCAAGTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.97146
Expected error %
0.299892
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g25440.1 Score 151 E Value 3e-37 Identity 17.60% Align. Length 449bp (64.23%) Frame 1
68417.m03663 WD-40 repeat family protein / zfwd1 protein (ZFWD1) identical to zfwd1 protein (GI:12057164) [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g51980.1 Score 145 E Value 2e-35 Identity 16.20% Align. Length 437bp (62.52%) Frame 1
68418.m06451 WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative 99.8% identical to zfwd2 protein (GI:12057166) [Arabidopsis thaliana]; contains 6 copies (2 weak) Pfam PF00400: WD domain, G-beta repeat; contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC19847.1| Score 151 E Value 1e-35 Identity 17.60% Align. Length 449bp (64.23%) Frame 1
zfwd1 protein [Arabidopsis thaliana] ref|NP_194274.2| WD-40 repeat family protein / zfwd1 protein (ZFWD1) [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA18182.1| Score 151 E Value 1e-35 Identity 17.60% Align. Length 449bp (64.23%) Frame 1
putative protein [Arabidopsis thaliana] pir||T05803 hypothetical protein M7J2.190 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0110I06
Clone
Clone name
hba-110i6
LE_HBa0110I06
P110I06
Clone type
BAC
Contamination
none
Estimated length
88,086
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found