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Clone Read LE_HBa0110G14_SP6_35258

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0110G14_SP6_35258
Primer
SP6
ID from Seq. Facility
LE_HBa_110_G14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
285 trimmed for vector and quality, 755 raw
Sequence
>LE_HBa0110G14_SP6_35258 (raw untrimmed)
AAACACTCCACATGAAGGTTAATGGACAAGTACTAGATATATCCATCTTTTCGGCCTTGCATCTTTTTCAGGGTTTCATCATTTCTGATTCGGAAGGCCT
TGATCGGATCACCAGCCCACCTGATGCTAATTACACTTACTCAGTTCAGGCTGGAATTTTAGCAGGAATTGACATGGTTTGTTTTGTTTGATCTCGAGTC
ATTTTTAGCAAAATGATAGTCTATATGATTGTTTTGTCTGTGAAGCAGGTTATGATTCCAAATAACTACCCAGAATTTATTGGGAATCTGACTCTACTAT
TGAAAGATAATATCATTCCCATGAGCAGAATTGATGATGCTGTATAGCGGATATTGAGAGTTAAGTTTATCCTGTATTACTTTGAATACCCACTGTCTGA
CTTATACTTGGTAAACCTACTCTGTAGCCAGGTAACGTTTGATATTCAAATCTGTTTTCATTGTTTGTGAATCTATTTGGTTTTTTACCTGTGAATAATT
GTGTATTTTCATGCTTCTCCCCTCCTCTGCTGTTTTTTCTTTAGTTGGCTATGTATTCTTGTAGCAATCCTGTTTTTTATTATTAAAATTCGGAACTATC
TTTATTTATTAATTTATTTCTTCTTTCTATTATTTTATTAAATATATTTCTTTTTTATTATTTATTTTTTCTTTTTCCGTTATTGAGTTTTGCTTCTCTT
TTTTTTTTCTTTTTCTTTGTCTTCTTTTTCTCTTTTTTTGTATTTTTCTTTTTAA
>LE_HBa0110G14_SP6_35258 (trimmed for quality and cloning vector)
ATATATCCATCTTTTCGGCCTTGCATCTTTTTCAGGGTTTCATCATTTCTGATTCGGAAGGCCTTGATCGGATCACCAGCCCACCTGATGCTAATTACAC
TTACTCAGTTCAGGCTGGAATTTTAGCAGGAATTGACATGGTTTGTTTTGTTTGATCTCGAGTCATTTTTAGCAAAATGATAGTCTATATGATTGTTTTG
TCTGTGAAGCAGGTTATGATTCCAAATAACTACCCAGAATTTATTGGGAATCTGACTCTACTATTGAAAGATAATATCATTCCCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954963
Expected error %
0.870208
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g20950.2 Score 67 E Value 2e-12 Identity 13.70% Align. Length 254bp (89.12%) Frame 1
68418.m02490 glycosyl hydrolase family 3 protein beta-D-glucan exohydrolase, Nicotiana tabacum, EMBL:AB017502
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g20950.1 Score 67 E Value 2e-12 Identity 13.70% Align. Length 254bp (89.12%) Frame 1
68418.m02489 glycosyl hydrolase family 3 protein beta-D-glucan exohydrolase, Nicotiana tabacum, EMBL:AB017502
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR14129.1| Score 88 E Value 9e-17 Identity 17.60% Align. Length 254bp (89.12%) Frame 1
exo-beta-glucanase [Lilium longiflorum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD13764.1| Score 88 E Value 9e-17 Identity 18.00% Align. Length 254bp (89.12%) Frame 1
exo-1,3-beta-glucanase [Lilium longiflorum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0110G14
Clone
Clone name
hba-110g14
LE_HBa0110G14
P110G14
Clone type
BAC
Contamination
none
Estimated length
102,117
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found