Clone Read LE_HBa0106P19_SP6_34932

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0106P19_SP6_34932
Primer
SP6
ID from Seq. Facility
LE_HBa_106_P19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
739 trimmed for vector and quality, 855 raw
Sequence
>LE_HBa0106P19_SP6_34932 (raw untrimmed)
CCAAACAATCTAAGAACCAACTCCTCTCAATACATCAACTTGTTTATCAAGGTGTTACTTAGACTTCACCTGAACCACTTTCAATCATTCAGAGTTATGA
TGGACCATAAAATCACCCTCTTGGAGAAATCTGAAAAACTAACACACAATCGAGCCAACCTCTGAAGATCTTTCACTAGGCATTTCTTGGATTCGACGAC
ATAAGATACACTAGCCATGGTCATACGACTTATAGCATACGCAACCAGATTGTCCTTCCCGGGGTGGTAAAGAGTAATAATGTCGTAATCTTTCAATAAT
TTAAACCACCTTCTTTGTTGGAGATTAACTCCTTTCTAGTAAACATATATTGAAGAATCCTGTGGTCGGTATACACATCATCATGAACACCATACAAGTA
ATGCCTCCATATTTTCAAAGAAAAAACCACGGCCGGTAACTCAAAATCATGAGTTGGGTAGTTCTTCTCATGCATCATATGTTTTCTAGAAGAATAAGCT
ACTACTTTCCCATGTTTCATAAGCACGCACCCTAAACCCACTCGAAATGCATCACAATATACAAAGAAGACCTTGGTACCATCCCTTAAAGTCAACAGCG
CAGCATATGTAATCCTATCTTTCGAAATTTGGAAGACTCTTTCTCATGCCTCCAACCACTAAAATTTCATAATTTTTTGGGTCATAGTAGTCAAGGGAGA
TACAACGGACGCCAAAACCATCCACAAACCTCTTATAGTATCCTGATAGACCCAAAAAGATTCTAATGTGAGTTGGAGCCAATGATATGACCAAGAAATG
CAACCTTCCTCAACCAAAACTCACATTTGCTATACTTGGGAAAAAATTGGTTTTC
>LE_HBa0106P19_SP6_34932 (trimmed for quality and cloning vector)
GTTTATCAAGGTGTTACTTAGACTTCACCTGAACCACTTTCAATCATTCAGAGTTATGATGGACCATAAAATCACCCTCTTGGAGAAATCTGAAAAACTA
ACACACAATCGAGCCAACCTCTGAAGATCTTTCACTAGGCATTTCTTGGATTCGACGACATAAGATACACTAGCCATGGTCATACGACTTATAGCATACG
CAACCAGATTGTCCTTCCCGGGGTGGTAAAGAGTAATAATGTCGTAATCTTTCAATAATTTAAACCACCTTCTTTGTTGGAGATTAACTCCTTTCTAGTA
AACATATATTGAAGAATCCTGTGGTCGGTATACACATCATCATGAACACCATACAAGTAATGCCTCCATATTTTCAAAGAAAAAACCACGGCCGGTAACT
CAAAATCATGAGTTGGGTAGTTCTTCTCATGCATCATATGTTTTCTAGAAGAATAAGCTACTACTTTCCCATGTTTCATAAGCACGCACCCTAAACCCAC
TCGAAATGCATCACAATATACAAAGAAGACCTTGGTACCATCCCTTAAAGTCAACAGCGCAGCATATGTAATCCTATCTTTCGAAATTTGGAAGACTCTT
TCTCATGCCTCCAACCACTAAAATTTCATAATTTTTTGGGTCATAGTAGTCAAGGGAGATACAACGGACGCCAAAACCATCCACAAACCTCTTATAGTAT
CCTGATAGACCCAAAAAGATTCTAATGTGAGTTGGAGCC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971994
Expected error %
0.399623
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 174 E Value 8e-48 Identity 56.20% Align. Length 659bp (89.17%) Frame 2
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 174 E Value 8e-48 Identity 56.20% Align. Length 659bp (89.17%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0106P19
Clone
Clone name
hba-106p19
LE_HBa0106P19
P106P19
Clone type
BAC
Contamination
none
Estimated length
78,992
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found