Clone Read LE_HBa0106A11_T7_34197

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0106A11_T7_34197
Primer
T7
ID from Seq. Facility
LE_HBa_106_A11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
420 trimmed for vector and quality, 876 raw
Sequence
>LE_HBa0106A11_T7_34197 (raw untrimmed)
TTTAATTCTGGGCCCGGGGGAATCCTCAGAGTCGACCTGCAGGCATGCAAGCTTTCACCTGACCACCCAACTTCATCGTATCATGCAAAAGGTCCCAGGC
CTTATCACACTTCCCACTTCGACAAAACTTGGTAATCAATTTAGTAAACCACACATCATCCAAGAACACACCATGCTCGAAGAATCTCACAAGAAGTCCA
TAGATTTCCTCCACACTCATCCTTCTCCCCACCCAATTACTCTTCCACATAGCACTCAGAACAATATCCACCGTACTATTGTTCGGAGGAAAATCACTAT
CCCTTTTGAGCATTTCGTCGAGCACCTTGAACCCATCATCAATATTCCTTCCACGAAACAAACAGTCCAACAACAAATTAACCACATTTGTATTTCTTGA
ATCCGAGTCCAGCTCATGGTATACAGATATCGATTCCTCCAGCATTTTGGCTCGCTTAAAGCATCGCATAAGAAGAGTCCCATCATTTGTCGATAAAGGG
ATTTTTTGGTCTTTAGCTAATGGAAATCAGTCGAAATCGTCCTCCGGGGTTCGCTCATATTTTTCTTCATCATTGCTGATCTCAGAATCATCTGATATGA
GATCGTAAGATTTTAGTTGTTTTATTTTTATTTGTACTATGAGTGTTTCACCATTTCTCAATTATTGTCTAAGTAGTCTCTGCTGATTAAGTTGGAGTTT
ATAATTGGTCCTTCTACTATGTTGATTGTTGTGTAATCTTATTCTACTTCGTGCCCATAACCGGTCACTCAACTACTCAGTCTTAACTCTCCTCTCGCAT
ACCTGTCTTCCTCTTTCGTTTTCTGGCTTTGCTGAAACGTCTTTGCGGCTGTGCGCCGACCGCGGTTCGGGGCGTG
>LE_HBa0106A11_T7_34197 (trimmed for quality and cloning vector)
AGTCGACCTGCAGGCATGCAAGCTTTCACCTGACCACCCAACTTCATCGTATCATGCAAAAGGTCCCAGGCCTTATCACACTTCCCACTTCGACAAAACT
TGGTAATCAATTTAGTAAACCACACATCATCCAAGAACACACCATGCTCGAAGAATCTCACAAGAAGTCCATAGATTTCCTCCACACTCATCCTTCTCCC
CACCCAATTACTCTTCCACATAGCACTCAGAACAATATCCACCGTACTATTGTTCGGAGGAAAATCACTATCCCTTTTGAGCATTTCGTCGAGCACCTTG
AACCCATCATCAATATTCCTTCCACGAAACAAACAGTCCAACAACAAATTAACCACATTTGTATTTCTTGAATCCGAGTCCAGCTCATGGTATACAGATA
TCGATTCCTCCAGCATTTTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.943461
Expected error %
0.229139
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g61520.1 Score 120 E Value 3e-28 Identity 15.20% Align. Length 374bp (89.05%) Frame 1
68416.m06890 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g28460.1 Score 118 E Value 1e-27 Identity 14.90% Align. Length 374bp (89.05%) Frame 1
68418.m03456 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB71082.1| Score 120 E Value 1e-26 Identity 15.20% Align. Length 374bp (89.05%) Frame 1
putative protein [Arabidopsis thaliana] ref|NP_191711.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] pir||T47944 hypothetical protein F2A19.120 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM61467.1| Score 120 E Value 1e-26 Identity 15.20% Align. Length 374bp (89.05%) Frame 1
unknown [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0106A11
Clone
Clone name
hba-106a11
LE_HBa0106A11
P106A11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found