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Clone Read LE_HBa0104H19_SP6_33780

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0104H19_SP6_33780
Primer
SP6
ID from Seq. Facility
LE_HBa_104_H19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
376 trimmed for vector and quality, 889 raw
Genbank Accession
DU089041
Sequence
>LE_HBa0104H19_SP6_33780 (raw untrimmed)
CCCGGGCATATAACCTAAAACCCTTTCTGTTAGTGATGATGTCTTAGGTTAAAAGAAGGTTTGATGAACTAAAAGAACCATTGTTAATGGATCGGGTGTC
ACGTTCCGACACCACGATACCAGTAGTGGATCGGGTGTCACGTTCCGACTTGCTTCATGGATAGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACC
AATGTTTGCTTCATTGATCGCCAAGATATTGCCGTGTCTCCACATGTAAACAAATAGCATGTTTGTGATCGAGTTTTATGCGGATCTGATAAATACCCTG
CATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAACCCATGTCCATGGTCCCTCTAAGATATCGAAGTATGTGTTTAACACCATT
CCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCCACTAGACTTACTGCACAACACCATATCTGGTCGAGTATTGTCTGACAACGTACATTAGTGCCC
CCATCGCACTAAGATAAGGAGTTTCATCACCATAAAGCTCTTCGTCCTTCTCGTGAGGTCGAAATGGATTCTGTATCGCTGTCAAGAGATCATACATTCA
TTGGACTACTCAATGGCATGTGAATTCTCCCTCTAGAAACGCTTCATCATCCTTCGCTGCGTACCCTTGATTGTGCACTAGTCATCCATTTCCACAGTTC
TCACTCTGTGTACCTATACAAAATTTTGTCCTGCCAGGATCGTTCATTTCAAATCCCCGTTCCCACACTCACACCCTCCTAAAGCTTTTTCTATCTTCCT
CGAGTGTTAATACGTTCTCTACTCTTCTCTTTCTTCTACCAGCCTCCTTCTCTTGTGTTATAATGGAGAACAGATTCCGTCCTGCTTGG
>LE_HBa0104H19_SP6_33780 (trimmed for quality and cloning vector)
TAAAAGAAGGTTTGATGAACTAAAAGAACCATTGTTAATGGATCGGGTGTCACGTTCCGACACCACGATACCAGTAGTGGATCGGGTGTCACGTTCCGAC
TTGCTTCATGGATAGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAATGTTTGCTTCATTGATCGCCAAGATATTGCCGTGTCTCCACATGTAA
ACAAATAGCATGTTTGTGATCGAGTTTTATGCGGATCTGATAAATACCCTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAA
ACCCATGTCCATGGTCCCTCTAAGATATCGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.973493
Expected error %
0.765329
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 63 E Value 5e-11 Identity 12.90% Align. Length 248bp (65.96%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS79613.1| Score 136 E Value 2e-31 Identity 23.00% Align. Length 260bp (69.15%) Frame 2
putative copia-like polyprotein [Ipomoea trifida]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP53060.1| Score 134 E Value 1e-30 Identity 23.40% Align. Length 260bp (69.15%) Frame 2
putative retroelement [Oryza sativa (japonica cultivar-group)] ref|NP_920773.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gb|AAM74357.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0104H19
Clone
Clone name
hba-104h19
LE_HBa0104H19
P104H19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found