Clone Read LE_HBa0104F22_SP6_33690

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0104F22_SP6_33690
Primer
SP6
ID from Seq. Facility
LE_HBa_104_F22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
746 trimmed for vector and quality, 829 raw
Genbank Accession
DU088964
Sequence
>LE_HBa0104F22_SP6_33690 (raw untrimmed)
CGGGCCAGCTTGGGAAATACAAGAAATGAGGGTCATTAGAAAGGGGACTGTGAAATTATTCTTGCATGGAGTTTGTTATTCCATTGGTAATGTATTGGAT
TCCTGAGCTTACAAATAATTTCTGAGCATTGGACATCTTCAAGAAAAAGGATTAGTTGTGTTATTTAAAGATGGTGCGTGCAATGTTTATCATCCACAAA
AAGGAAAGATGGAGGAATCCACTATCAGTGCAAATCAGATGTTTATTTTGCTTGTTGAGCCCTCATCCACAAATATTGAGGCAAGATGTCTCCAAATAAA
CAATACAGATCAATCAAGTCTGTCACTATCTTTATTTCCATTTTAGTTACAAAGGCCTTCCCACTTTGAAATACAAAAATATGGTGAAGGGTTTGCCACA
AATTCTAGCACCAAGTGCCACTTGCGAGGCATGAATGAAAGGAAAGCAACATCGGACTCCAATTTGTAAAAGGGGTCAATAAAGAGCAACTAGAAGATTG
GTTCTAGTTCATGCAACTCTGTGTGGTCCCATTACTCCAGCATCAAGCAGCTAGAAGAGGGGTACGTATCGTGTTTTATAGATACTTTTTTCAGGAAAAC
ATGGCCTTATTTTCTTTTGGAAAAATAAGAAACATTTTATCACTTTAAATGTTTTAAAGCACTTGTGGAAAAGGAAACTGGGATGCTCATTTAATATTTA
AGAATAGGTAGAGGAGGAGAATTCAATTCTGCAGAATTCAATGATTTTTGCAAACAACATGGCGTGAAGAGACAATTCCCCACAACCTATACTTCATAGC
CAGACTGAGTAACTTAACCCAAGAAATGA
>LE_HBa0104F22_SP6_33690 (trimmed for quality and cloning vector)
GAGGGTCATTAGAAAGGGGACTGTGAAATTATTCTTGCATGGAGTTTGTTATTCCATTGGTAATGTATTGGATTCCTGAGCTTACAAATAATTTCTGAGC
ATTGGACATCTTCAAGAAAAAGGATTAGTTGTGTTATTTAAAGATGGTGCGTGCAATGTTTATCATCCACAAAAAGGAAAGATGGAGGAATCCACTATCA
GTGCAAATCAGATGTTTATTTTGCTTGTTGAGCCCTCATCCACAAATATTGAGGCAAGATGTCTCCAAATAAACAATACAGATCAATCAAGTCTGTCACT
ATCTTTATTTCCATTTTAGTTACAAAGGCCTTCCCACTTTGAAATACAAAAATATGGTGAAGGGTTTGCCACAAATTCTAGCACCAAGTGCCACTTGCGA
GGCATGAATGAAAGGAAAGCAACATCGGACTCCAATTTGTAAAAGGGGTCAATAAAGAGCAACTAGAAGATTGGTTCTAGTTCATGCAACTCTGTGTGGT
CCCATTACTCCAGCATCAAGCAGCTAGAAGAGGGGTACGTATCGTGTTTTATAGATACTTTTTTCAGGAAAACATGGCCTTATTTTCTTTTGGAAAAATA
AGAAACATTTTATCACTTTAAATGTTTTAAAGCACTTGTGGAAAAGGAAACTGGGATGCTCATTTAATATTTAAGAATAGGTAGAGGAGGAGAATTCAAT
TCTGCAGAATTCAATGATTTTTGCAAACAACATGGCGTGAAGAGAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948045
Expected error %
0.295264
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG51247.1| Score 81 E Value 3e-35 Identity 44.90% Align. Length 731bp (97.99%) Frame 3
copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana] pir||E86451 probable copia-type polyprotein, 28768-32772 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB11200.1| Score 81 E Value 3e-35 Identity 44.90% Align. Length 731bp (97.99%) Frame 3
copia-type polyprotein [Arabidopsis thaliana] emb|CAC37622.1| polyprotein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0104F22
Clone
Clone name
hba-104f22
LE_HBa0104F22
P104F22
Clone type
BAC
Contamination
none
Estimated length
102,424
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found