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Clone Read LE_HBa0104E17_T7_33633

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0104E17_T7_33633
Primer
T7
ID from Seq. Facility
LE_HBa_104_E17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
833 trimmed for vector and quality, 924 raw
Genbank Accession
DU088916
Sequence
>LE_HBa0104E17_T7_33633 (raw untrimmed)
TAACACTGGGCCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGCCCTATACAAAGAAAAGATCATTAAGTACCATGACCAAAAAATTG
GAAAACGAGAGTTTATCGTCGGGGATTTGGTGCTTTTATTCAATTCTAGGTTGCGCTTGTTTCCGGGCAAGCTCAAGTCCAAATGGACTAGTCCTTACAT
GGTTACCCAACTATTCCCTCATGGAGCAATTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAACACATAAAAATCTATTTCGGGCAT
GCTGAATCAGCGAATGAAGTCATCGAGGCATACCATCTTGATGAATTCTGAGTAATCAAGTGTCCTCAGTCGTGCTTCGACGTTAAATTAGGCGCTTGTT
GGGAGGCAACCCAATACTTATAGTTTTTCTTTCTAGTAATGGTAGCATTTTCTACTCATGGGTTTTAAATTTGCAGGTACATCACCAGGAAATTCTGCAA
AAAATCACTCTGCAACAGTCACTGACGCACACGAGGATGGACCGTCACTCATGCGACGGACTGTCGCATGAATCCGTCGTGTCAGGTATGTCTTTCTGTT
ATTTTTAAAACTAGGGCACACGCGACTGAACCAACGACGGACCGTCACAACTGCTATGGACCGTCATTGGGGACTCGTCACGTTATTAATGAAGCATACC
TGACCCGAAAGTGGATTTTTACCTCTAAACCTACTAAACGTGCTAAAATCATGTGAATTTTACTCTATTTTTATTTAAGTGCAAGTAGATTTTACTCTAT
TCACTTAAAAGTATGTTATTTCTGTAATTTGTCATTTAAAGAAAATATGACCAATAGGGCGGGTTGGGCTTTGAAAATAATGGTGAATTGTATTTTTTAG
GCAAAAATACAAGTTTATATTCTG
>LE_HBa0104E17_T7_33633 (trimmed for quality and cloning vector)
AGCTTAGCCCTATACAAAGAAAAGATCATTAAGTACCATGACCAAAAAATTGGAAAACGAGAGTTTATCGTCGGGGATTTGGTGCTTTTATTCAATTCTA
GGTTGCGCTTGTTTCCGGGCAAGCTCAAGTCCAAATGGACTAGTCCTTACATGGTTACCCAACTATTCCCTCATGGAGCAATTGAGTTGGAAACTAAGGA
GGGTGTGCGGTTCAAGGTGAATGGACAACACATAAAAATCTATTTCGGGCATGCTGAATCAGCGAATGAAGTCATCGAGGCATACCATCTTGATGAATTC
TGAGTAATCAAGTGTCCTCAGTCGTGCTTCGACGTTAAATTAGGCGCTTGTTGGGAGGCAACCCAATACTTATAGTTTTTCTTTCTAGTAATGGTAGCAT
TTTCTACTCATGGGTTTTAAATTTGCAGGTACATCACCAGGAAATTCTGCAAAAAATCACTCTGCAACAGTCACTGACGCACACGAGGATGGACCGTCAC
TCATGCGACGGACTGTCGCATGAATCCGTCGTGTCAGGTATGTCTTTCTGTTATTTTTAAAACTAGGGCACACGCGACTGAACCAACGACGGACCGTCAC
AACTGCTATGGACCGTCATTGGGGACTCGTCACGTTATTAATGAAGCATACCTGACCCGAAAGTGGATTTTTACCTCTAAACCTACTAAACGTGCTAAAA
TCATGTGAATTTTACTCTATTTTTATTTAAGTGCAAGTAGATTTTACTCTATTCACTTAAAAGTATGTTATTTCTGTAATTTGTCATTTAAAGAAAATAT
GACCAATAGGGCGGGTTGGGCTTTGAAAATAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.979923
Expected error %
0.859257
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82031.1| Score 100 E Value 5e-20 Identity 16.00% Align. Length 287bp (34.45%) Frame 2
pol [Pisum sativum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF79809.1| Score 95 E Value 2e-18 Identity 19.80% Align. Length 242bp (29.05%) Frame 2
T32E20.9 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0104E17
Clone
Clone name
hba-104e17
LE_HBa0104E17
P104E17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found