Clone Read LE_HBa0104B17_SP6_33488

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0104B17_SP6_33488
Primer
SP6
ID from Seq. Facility
LE_HBa_104_B17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
689 trimmed for vector and quality, 900 raw
Genbank Accession
DU088798
Sequence
>LE_HBa0104B17_SP6_33488 (raw untrimmed)
GGGAAAAATTTTAAAACAAATGGTACGAACTCTAGGAATTGAGTTACCCTTCTTCAAATCTAAGACGGGCTTATTAGGAAAAGTCAATACTCTTGTTTGA
AAATCTATGGAAGCAAAACAATCATACAACCACTCCATTCCAAAAATAACATCAAAATCAACCATATCAAGTTCTATTAAATCCACCCATGTAACTCTAT
TGGGCAAAGATATAGGACATGTTCCTAAAGACTCTTCTAGCAACAACGGAGTCACCCATGGGGGTTGTAACTGAAAATAGATCAATCAAAGTATCATGTA
GAACATTAATATTTTTAGCTAATAGAGGAGTTACAAATGATATAGTAGCACCGGGATCAAGTTAAGCATAAACATCAATAGAGAATAATTGTAACATATC
AGTAACCACATCGTGAGACTCTTCTTATTCACCCATAGAACAGAGAGCATAGAAGTGGTTCCTCTTGGGAGCTTCGAAATTAGGACCGCTTGCATGAGCT
TGACTACTCTCTTTCTCTTGAATCCTCACTTTAGGAAAATCCCTAACCTTATGGCCCTCTTTTCCACAACCATAGCAATTTGCCATTCGCACCAAGCATT
AACCCATATGTTTCTTACCATATATTGCACGAGAATGTTTTCCACTTGGCGGATTTCTACACCTTCCCTTTTGAGACCTAGGGTTAGACACCCTATACTT
GTTTTCCTTGTGGAAATTTGGGGGAACTTGGTTGGAAACTCCCTTCATGAACATTGGAATTTAATGAATCCTAAGCCTCCCCCTAAAAGTGCCCCCTCCA
TAGAAATGGCCCTCTAAAATTCTTTTATCCCCTTGAATCTAGTATCCTAACTTATTTTGACAAAACTATAACCGAAAGATAACTTATGTGCGTGAAAACC
>LE_HBa0104B17_SP6_33488 (trimmed for quality and cloning vector)
TGGTACGAACTCTAGGAATTGAGTTACCCTTCTTCAAATCTAAGACGGGCTTATTAGGAAAAGTCAATACTCTTGTTTGAAAATCTATGGAAGCAAAACA
ATCATACAACCACTCCATTCCAAAAATAACATCAAAATCAACCATATCAAGTTCTATTAAATCCACCCATGTAACTCTATTGGGCAAAGATATAGGACAT
GTTCCTAAAGACTCTTCTAGCAACAACGGAGTCACCCATGGGGGTTGTAACTGAAAATAGATCAATCAAAGTATCATGTAGAACATTAATATTTTTAGCT
AATAGAGGAGTTACAAATGATATAGTAGCACCGGGATCAAGTTAAGCATAAACATCAATAGAGAATAATTGTAACATATCAGTAACCACATCGTGAGACT
CTTCTTATTCACCCATAGAACAGAGAGCATAGAAGTGGTTCCTCTTGGGAGCTTCGAAATTAGGACCGCTTGCATGAGCTTGACTACTCTCTTTCTCTTG
AATCCTCACTTTAGGAAAATCCCTAACCTTATGGCCCTCTTTTCCACAACCATAGCAATTTGCCATTCGCACCAAGCATTAACCCATATGTTTCTTACCA
TATATTGCACGAGAATGTTTTCCACTTGGCGGATTTCTACACCTTCCCTTTTGAGACCTAGGGTTAGACACCCTATACTTGTTTTCCTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960698
Expected error %
0.175788
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 100 E Value 3e-20 Identity 42.10% Align. Length 588bp (85.34%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 100 E Value 6e-20 Identity 38.50% Align. Length 663bp (96.23%) Frame 3
putative gag-pol protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0104B17
Clone
Clone name
hba-104b17
LE_HBa0104B17
P104B17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found