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Clone Read LE_HBa0103A03_SP6_32644

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0103A03_SP6_32644
Primer
SP6
ID from Seq. Facility
LE_HBa_103_A03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
50 trimmed for vector and quality, 798 raw
Sequence
>LE_HBa0103A03_SP6_32644 (raw untrimmed)
AAAGAATTGCTTAAAGCATGAATGTTGAGCTTGACTTAACCCCTTTGTCGACAAGTCTACAAGTTGTTGAGTCCGATCAGGGGTCCCTCCCATCACCCCN
GCCNNCANCNNGCCCTTTTAAAGACGACAGCCCANNCCGAGGGNCCAGCCCCCNNNACGGAAGACCGGACCGGCCGCGAANNGCANAGCCGACNCGCCGC
CACCCAAAANAGCGACANGCANNGGANGGGGCACNCCNAGCNCAGNGAAAAANCCNANNAACCANGCNNCNGNAAGCCANGCNNCNANACNCGACCNCAG
CNGAGCNNGNGGAAACAANNNGANANNGCNNAGACNNCCAAGACACCAAAGACAGCACCGAACGNGACCACANAGCCGGNAANGGACCNNCNAGNGCNGN
GACAAAGCAGNCCCANCAGAGCCACACAACACAGAGAAACCCACNANGCCCCNNAAGCNANGGNACAAGCACCCANAACGAAACAANACGNNCNCNNCCC
AAGAAANGCAANCNGCAGAGACCAGCACGAGAGCCCACAANNCNCCGAACCCGNCGCCACAGACAGGCCAAAGNGACAAGGAACAAGCCNAGNGAANGCC
ANNGNAGAAACCCACAACAACACAGCCAAAGGACANCCAAGCGAAGCCACAAAACCACCACGAAGAAGCCAGGAACGAACGCGCGGACACCAGGAAAAAC
CAGAGGCCAAGAAACCCCCCAAGGACAAAGCCAACGAACCAAGAAAAAAAACAACAGCCAAGCAGGCCAGAAACCCAAACCAAAAAGGGAAAGCAACC
>LE_HBa0103A03_SP6_32644 (trimmed for quality and cloning vector)
ATGTTGAGCTTGACTTAACCCCTTTGTCGACAAGTCTACAAGTTGTTGAG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.873415
Expected error %
0.0552325
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0103A03
Clone
Clone name
hba-103a3
LE_HBa0103A03
P103A03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found