Clone Read LE_HBa0099P06_SP6_31834

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099P06_SP6_31834
Primer
SP6
ID from Seq. Facility
LE_HBa_099_P06-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
17 trimmed for vector and quality, 827 raw
Sequence
>LE_HBa0099P06_SP6_31834 (raw untrimmed)
CGAGGGGGCCACTCACAGAGGGTTTAACGTAGGGTAAATAGCGCTTCCATAGGAAAATAACGAAAGAGTAGACATATCTCCCCGGTGAGATAAATATNGG
TACTCCTCTAATTTACCTACGCTCCTCCCAGATTTCGTTTTATTAAAGGGGATTTAATTATTTCTTTTAAGCTAAACCGCATTATTTTACTTTGACTGTT
TATAACTTTTTCTTTTATTTTATTTTTGTATTTATATCCCGTTTGTCTTTTCTTTATTGTCTTTTGGTTGGTTTATTCTTATTTTCTTTCTTTTTTATTT
TTCTTTCGCGTTCGTTTTCTTTTTTTTTTTTTTTCTTTTACAGTTTTTTTTTTCTTTTTTTGTTTTTTTTTTTCGTTTTTTTTTTTTTTTACATTTTTTC
TTTTTTTTTTTTTTTCTTTTCTAGCCCAAGCCCACTTGGCCAATCGCCAGCGACTCGTAGGACGAAGGCTTTTTTTTGTT
TTTTTTTTTTTTTTTTTTCA
AGATCGAACGCTACTCATTGGTAAATTTCCGTGTTGTTCCTCTTTACCTGTGGTATCTTTTCTTTTATTTTTTTCTATATACTTATAATATTTAATTTAT
AATCAAAAATCACATAACCTACACAAAATATCAACTCGNNNNTCCCTCTTCTTTCTATTTTCATTCTGTCACAGCCCCCACCTATCCTCTCTTTATGCGT
CCGTGCCTTCACTTCACTCCTTTCCTATCTTAATCCCCTCAAGCCTGCTTTATTTCACCTTTACTTCTTTTATTCTCCTCCAATTTGTCTAGTTCTTTCT
CCGTGGTGATGTCCCTTGTGTCTCTCC
>LE_HBa0099P06_SP6_31834 (trimmed for quality and cloning vector)
TTTTTTTTTTTTTTTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.333023
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099P06
Clone
Clone name
hba-99p6
LE_HBa0099P06
P099P06
Clone type
BAC
Contamination
none
Estimated length
103,172
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found