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Clone Read LE_HBa0099F01_SP6_31344

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099F01_SP6_31344
Primer
SP6
ID from Seq. Facility
LE_HBa_099_F01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
101 trimmed for vector and quality, 736 raw
Sequence
>LE_HBa0099F01_SP6_31344 (raw untrimmed)
TAGGGGAGCCCCCTTTTTTTTTTTATAATACCAATTTTCTTCCTTTCCTAATTTCCGTCTACTTCTTATTTTACTTAGCGATCCGAGTTTTCAGGCTTCC
TTTGAGTTTGC
AAGAACGTGCAAGAATCGTGAGTAAACCGTCAAGTGTCGCACGGAGTATTGTCCGAATCAAAAAGTCTGTGACAATTGGTATTAGAGCA
GGTTCATCGTAAGAGAATGACGAACGAAGGAGACGGAAGCGACGCTAGTTACATCCCCAACATTCAGGTGGGAAAGAAGAACATTAAAGGGAAGAAGCAT
CAGCAAAAGGGAAATGATCCCTATTTTTTTTTTCTTGCCGATCTTCCACCTACTTATCCGGCAGCAACAAATCTTCCATCAGGCACACTACTACCAGGTG
GTCAGCTGATCACGCAGTCTGCCTCCAGTGGGCCAGCCCTCAGGTAGTCTGCCACCAGGCGGTCAGCCATGGCATTCTGCCATCATGCGGTCTTCCTATC
TATGATTTCGCTCCTATTTGCGTTTCCTATCGTTGGACCACCTTTTCCTGTATATCGTGTCGATGAACGTGCTGCTATGTCATGTAAAATCTTTACTTCC
TGTGTTAATTGATGCTTGTCGCTGTGAAGGTAAGGCCTTGGTGACTTTGGCGCGACTTACTTTGTTGTATGCTTGTTACATACTATAATTTTTCCTTAGT
CACATTTTTTATTCTTATTGCTCTCCCTCCCCTCTN
>LE_HBa0099F01_SP6_31344 (trimmed for quality and cloning vector)
AAGAACGTGCAAGAATCGTGAGTAAACCGTCAAGTGTCGCACGGAGTATTGTCCGAATCAAAAAGTCTGTGACAATTGGTATTAGAGCAGGTTCATCGTA
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.947239
Expected error %
0.681064
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099F01
Clone
Clone name
hba-99f1
LE_HBa0099F01
C02HBa0099F01
P099F01
Clone type
BAC
Contamination
none
Estimated length
133,019
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found