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Clone Read LE_HBa0099D01_T7_31249

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099D01_T7_31249
Primer
T7
ID from Seq. Facility
LE_HBa_099_D01-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
129 trimmed for vector and quality, 804 raw
Sequence
>LE_HBa0099D01_T7_31249 (raw untrimmed)
TTGCTGACTGCATCTAATAGGAATTCCAGGATCCCTTTTGAGAGTTTTTTTCTTTTTTGTATTTTTTTCTTCTTTTTGCCTTATATGATATTTTTTGATT
ATTACTCTTA
TGAGAACTGAGCTTGGGTTGGTACTAAAATATATACCTGGGGTGCAGAAAAGATAAATGCAGTTAAATACTTGCCTAAACCACCACCTCC
TAATGATGAATGTTATTATGCAGAGGACTCCTATGCAATAAATGACCAGACCGGGGATTTCCCACCGAGCGCTCAAGGCTCTACATCAGGATAATTCAGC
GTCAACGTCAAGGGAACAAAGTTCGGATCTATGGTAACCTTAACTCGTAGGGTTATTATTCTCTGACTTCCCCTCCTCATCTTTTTCAGTCTCTCCACTC
CTCGCTCACTATCCTAAGATCAATGATAGACACTGCGTTCATCTTCCCCCCCAATAGTGCTAACTTGGCACCCGTTACTGTGTATAGCCTACTGTCTGGT
ATATGTTCTCTTTCCACATTCTTACTTGATCCGTATCGTGCCACTCCGATCACCTTTACTTATTTGCTTACTTTCTCGTTTCCTTTCCTTACTCATTCTT
TCTTCTATTCTTCTCTTCTTTCCTATTCTTTTCACGTTTCTAACAGGCTATTCCTATCTCGTTTCATCCCGCTCTTTACATTTTCCTTATCCAATATATT
CACTATCTAATACGAGCTTGACTACAACGTGAGTTCATTGCTCGCTTCTCTTTCTCTCACTTCTGTCTCTAGCGCATCACCGTCCGGCCCGCATGGGTCG
GCCT
>LE_HBa0099D01_T7_31249 (trimmed for quality and cloning vector)
TGAGAACTGAGCTTGGGTTGGTACTAAAATATATACCTGGGGTGCAGAAAAGATAAATGCAGTTAAATACTTGCCTAAACCACCACCTCCTAATGATGAA
TGTTATTATGCAGAGGACTCCTATGCAAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.931941
Expected error %
0.596372
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099D01
Clone
Clone name
hba-99d1
LE_HBa0099D01
P099D01
Clone type
BAC
Contamination
none
Estimated length
173,766
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found