Clone Read LE_HBa0098D03_SP6_30484

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0098D03_SP6_30484
Primer
SP6
ID from Seq. Facility
LE_HBa_098_D03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
658 trimmed for vector and quality, 812 raw
Genbank Accession
DU089507
Sequence
>LE_HBa0098D03_SP6_30484 (raw untrimmed)
GCTGGCCAACTGGGTGCTTATTCGCCTATATCTCATTCTTTGTTGAGCCCTGGACAATTGGAACTTGAGCCATGCAATAATAGTTTCCCTTTCCTCCAAA
GATCTATCGGCCCCCTTATTAGAGGACTCACAAGCCAAATAGGGAAGATGAATATTTGGTTTTTGACCATAAAAAGCTTCTAAAGGGGAACACTTGAGAG
GTGAGTGATAGGTTGTGTTGTACCACCACTCATCAAGAGGTAAGTGAGCCACCTATTCCAAAGGTTTGTCTAAGCAAAAACACATTAGATAAGTCTCCAA
GGTCCAATTCAAGACCTCATTCTGACCATCTGTTTGAGAATGGTAAGCTGTAGACTTATGCAATCGAACTCCTTTGAATGTGAACAGTTCTTGCCAGAAG
GAACTTAAGAAACAAGATCCTTATCACTGACTATAGTAAAGGGCATACCATGCAACCTAAACACAATGTCCAAGAAGCTATGAGCTACAATCTGAGCAGT
GTAAGGATGTTGTAAGGCAATGAAATGGAAATACTTACTCAACCTATCAACCACCACTAGAATGACATCCTTGCCTTTAGATTTAGGTAAACCCTCAATG
AAATTCAAGTTGATGTCAGTCCAACACCTTTAGGAATGGGTAGAGGTTGAATGAAGCCCGGATAAGCTGAGGCATCATACTTGTGTCTTTGGCATACATC
ACATCTATTAATAAAGCTCCTAACATCTGTAACCATAATCTTCCTAGTAAAATAAAGGATTGCAATCCTCCTACCGGTAGAAATCCCTCCAAGAGCACCC
TGAGGTGGTAAA
>LE_HBa0098D03_SP6_30484 (trimmed for quality and cloning vector)
TATATCTCATTCTTTGTTGAGCCCTGGACAATTGGAACTTGAGCCATGCAATAATAGTTTCCCTTTCCTCCAAAGATCTATCGGCCCCCTTATTAGAGGA
CTCACAAGCCAAATAGGGAAGATGAATATTTGGTTTTTGACCATAAAAAGCTTCTAAAGGGGAACACTTGAGAGGTGAGTGATAGGTTGTGTTGTACCAC
CACTCATCAAGAGGTAAGTGAGCCACCTATTCCAAAGGTTTGTCTAAGCAAAAACACATTAGATAAGTCTCCAAGGTCCAATTCAAGACCTCATTCTGAC
CATCTGTTTGAGAATGGTAAGCTGTAGACTTATGCAATCGAACTCCTTTGAATGTGAACAGTTCTTGCCAGAAGGAACTTAAGAAACAAGATCCTTATCA
CTGACTATAGTAAAGGGCATACCATGCAACCTAAACACAATGTCCAAGAAGCTATGAGCTACAATCTGAGCAGTGTAAGGATGTTGTAAGGCAATGAAAT
GGAAATACTTACTCAACCTATCAACCACCACTAGAATGACATCCTTGCCTTTAGATTTAGGTAAACCCTCAATGAAATTCAAGTTGATGTCAGTCCAACA
CCTTTAGGAATGGGTAGAGGTTGAATGAAGCCCGGATAAGCTGAGGCATCATACTTGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964444
Expected error %
0.32654
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB03109.1| Score 137 E Value 7e-57 Identity 52.80% Align. Length 651bp (98.94%) Frame 3
retroelement pol polyprotein [Arabidopsis thaliana] gb|AAG51046.1| gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG51464.1| Score 133 E Value 4e-55 Identity 52.00% Align. Length 651bp (98.94%) Frame 3
gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana] pir||G86474 probable protein gypsy/Ty3 element polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0098D03
Clone
Clone name
hba-98d3
LE_HBa0098D03
P098D03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found