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Clone Read LE_HBa0116P08_SP6_300643

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0116P08_SP6_300643
Primer
SP6
ID from Seq. Facility
LE_HBa_116_P08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1687 raw
Sequence
>LE_HBa0116P08_SP6_300643 (raw untrimmed)
CTGCATCTGTAGCACCCTAAGCATCGCGGATGCACAGTGGGTGGNAATCCCGGAAGCTCACACGCCTAGATGACTCTGGAGTGTCCACGGGACGTACGCT
CCACNTCATATACATCGNTGTGAACACACGCGCGCCATCGGTTTTGCATCCTGTATGAGACAGCAAGAGGGAGTATCGCTGAGCGTGACAGACACTCTGA
GTGATATACCTATCACGCATATGCACACCGCGATGACTAGCAAGATTATAGAGTCACCTCTGACTGCTACTATCTGATCGCAGCACTAGTGACCCAGAGC
TACCTCCGTAGAGACACCGACGCTCACATGCCCATAATCTGCCATCAGAGTCGACACATCCTCATACCCCTGAACTCTCATAGCCATTGAAACACATTTC
GCCACCCCACCCGTTACGCTATCTCATCAATATCTGCCGCGCGATCTCAGGAACGCAATGCCAGGACACTCCCCATCTCCTTCTCAATAGACGCGAGACA
CCGACTTCTAGCCTAACAGTCCTATGCCTCGTAGACGCGACCGCTCTGACCTACACCACCATCGCGCTCTATATGCTCCTCTCCGGACAGTCAGTTGATA
CAGTCTATGAAAATCACACACTCCTTCACTTCTGAACCCCTGCACCACACACAGAGATCTAATATCTAGTCTGCAACGACTATGACTCCAGTCGCTCTAC
CAGACCTCTCTGCCCACTACCGAACCATCCAGATCTCAGCTCCATCCTCATTCATCAACCCTACTCCAATATCCATCTACTGTACATACTGCAGACATCC
GACTCTACGCACTTTGCGTCTGTCTCCTCACGCGTGAGCCTACACCTGTCGGCGTATTATCCTCGATGCAGCAACAGTACTTTATTTGACCTCCGCCTAC
GTATCGTATACTCTCCTACCAATACTCTGCCCTGAATAGTAAATACTACTCGTCGGACTCTTGCAAGATACTCATCTTTCTCACTGCTCTACCACGTTCA
CTCGTGCCGACTTCATTGTCCTACCTACTTTCACATCTATCCCTCACACTAATGTCACACTATACACCTCCCACACACCTTGACTCCGAATCGACACACC
TATCCTCTTGCCCACACACGCCTGCTTTCAATAGTGCTCACCCTTATACTCGCTTTCTTGCTCACTTCGCCCTAGCACCCTATTATCCATCTGATGACCA
TCCCATACCCTAGTCACCTGTCTCCATTCCACATCAGACACTCACCGATCACATAACTATCTTCTCTCATCGAGTGTCAACAACGAGCACGCCTATTGGA
CACTACATCAACTATCACCATCTCCGTTCTCATCTACACCGCTGTCACTTTATTGCTCTCCGCCGCCAATCTACGCACGCTCACCATACACTATAACAGA
CTANACACTGCTTCCATCCCCGTCCCTCTCTCGTATCTCATCATCATGTCGTGACACACAACCATTGCCTCTCGACACAACTACATACACCCTTCCAATA
TTCTGCTCAACCTCATATGTCTTGCCCTTCTCACATACTGCCTCACTGCGACACCTCACTGGTTATCATACATACAACTTCTCCATACATCTCTAACTGC
AGCTATACGAGCTCGGGATCATCACTTACTCACTACATTGACATTCGCTCTCATCCACAGCTCCTACGTGATCCCTTCCATCACCTG
>LE_HBa0116P08_SP6_300643 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.39716
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0116P08
Clone
Clone name
hba-116p8
LE_HBa0116P08
P116P08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found