Clone Read LE_HBa0116G13_SP6_300226

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0116G13_SP6_300226
Primer
SP6
ID from Seq. Facility
LE_HBa_116_G13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
432 trimmed for vector and quality, 929 raw
Sequence
>LE_HBa0116G13_SP6_300226 (raw untrimmed)
GATGGAAATCAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGCTGGTCTGAATTTGATCAATTTTGTAAGGGTGAAGGGAT
TGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAAAACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAAT
GCTGGGCTAGATAGAAGATTCTGGACAAAAACGGTTAGTACAGCTTGCTACTTGGTTAACCGCGGAACACATACAGGCATACAGTGCAAGACACCTATGG
AGATGTGGTCAGGAAAAGATGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAA
AAAGGGAGTATTTGTGGGCTACGGAGGTGGAGTGAAATGTTTCAGAATCCGGTCTCCAGCAGAATAGAAGGTTATTATGAGCAGGAACGTTGTTCTTTCA
TGAAAGTTCTCTGCTTAAAACATTGTGAAGCCTACAACTTACCTTCAGATACTGGGAGTTCTGATAATCAGGTGGACTTCCAGTCATTCTCATCGAGTTC
TCATTTGTACACCCTTAATTGTATGTTCTTTATCTTTGTCTCAATTTCTCTTCACTTATTTTTGTCCTTTATATCATTTTTTTTATCCTTTTCATTCCCT
TAGTTGGTTTATGTTCCACTTCTCTCTTTGTTACTATTTTCTCTCTTTGTTGTTTTTTCCCTTTATTATTCTCTTTCTTCTTTACCTTTTTTTTTATTTT
ACTTCTCTATCCTATTTTTCTTTATTCTCTACTACTATATATCTCTTTCTCTTTTCTATTCAGTCTTATAATCTAAATTATCATTCTGATACGTCTATCA
TACTTGCTATCTGATTGTTCTTACACCTC
>LE_HBa0116G13_SP6_300226 (trimmed for quality and cloning vector)
AACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGCTGGTCTGAATTTGATCAATTTTGTAAGGGTGAAGGGATTGCTCGACAT
CGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAAAACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAG
ATAGAAGATTCTGGACAAAAACGGTTAGTACAGCTTGCTACTTGGTTAACCGCGGAACACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTC
AGGAAAAGATGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTA
TTTGTGGGCTACGGAGGTGGAGTGAAATGTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963177
Expected error %
0.0448363
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX92941.1| Score 179 E Value 2e-44 Identity 20.90% Align. Length 386bp (89.35%) Frame 3
retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX92861.1| Score 175 E Value 3e-43 Identity 20.40% Align. Length 386bp (89.35%) Frame 3
retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0116G13
Clone
Clone name
hba-116g13
LE_HBa0116G13
P116G13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found