Clone Read LE_HBa0116D09_SP6_300071

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0116D09_SP6_300071
Primer
SP6
ID from Seq. Facility
LE_HBa_116_D09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
591 trimmed for vector and quality, 964 raw
Sequence
>LE_HBa0116D09_SP6_300071 (raw untrimmed)
CACATCTGAGTGAGCAGCACCTAAATCAGTCCATGAAACAAAAGGAGAAAACGCTAAAGTTAGTAAAAATAGAAGAAAATAATGTTAGGGAAGTGATAAA
TTGTTAAGGAAACATACTCAATGAAGTTATCATATTCAATGGCCTTGTTCAGTCCACCAGTTTTGTCAAACTTGGAAACCAGCAGCTCCAAAACAGGACC
ATATACAGCATATCCCAAGCTATGTAAGGCCTCTCTTAATTCAGAGGAATCAATTTTTCCACTCCTATCCTTGTCAAATCTTTCAAAAATTGCCTACACA
TATTACAAGTTTTTCAATAAGATATAGCATATAAAGTAACACATCTCTCAAATTTGAGAAGAAGTAAATGCACAAAGTCATGTTGCTCGTGATTCTCCAA
AAATGTTGTCGCAGTCACGTCGATTCTCAAAATATACACTACTTTTGGAGGATCAGACATGCATCCGCCGATATTTTTAAGAGTCTGAGCAACATAGATC
GAAAGGTGGCTATGAGAAATTCAACTTCAACTTACCCTCCAGTTCTGAAGACTATAGAAGACTGCAGTGAATTCTTTGGGACCTGCTTCCATTTAAAAAA
AAGGTTGGATTATATGAAAAGAGTTGATGGTAAAAAAACCCTAAAGTATCATCTTTTCTATTTAGCATAATCCATAAACATGACCCGTAACTTGACTTTC
ATGGGACAATATGTCATCAAATTTTGAGTGGACCCCAATAAACACTTAAACTTTATAAAATTAAACAAGCCAAACCCCGTGTCCTTACTTGAACTTAATT
CCCCTTTTTAATGGTAGAATAAAAATTGTCCTGGTTAAGGGTGCCAGGTTAGAAAAATAGGTCTAATTTGTTTCCACCTTATATAAAATTTTGAGTGTTC
ACATTTTTTCTAAAACCCAATATTCTAAAGGTTCCTACAATTTTCGTTACAAAAATTCTATGTC
>LE_HBa0116D09_SP6_300071 (trimmed for quality and cloning vector)
AGCACCTAAATCAGTCCATGAAACAAAAGGAGAAAACGCTAAAGTTAGTAAAAATAGAAGAAAATAATGTTAGGGAAGTGATAAATTGTTAAGGAAACAT
ACTCAATGAAGTTATCATATTCAATGGCCTTGTTCAGTCCACCAGTTTTGTCAAACTTGGAAACCAGCAGCTCCAAAACAGGACCATATACAGCATATCC
CAAGCTATGTAAGGCCTCTCTTAATTCAGAGGAATCAATTTTTCCACTCCTATCCTTGTCAAATCTTTCAAAAATTGCCTACACATATTACAAGTTTTTC
AATAAGATATAGCATATAAAGTAACACATCTCTCAAATTTGAGAAGAAGTAAATGCACAAAGTCATGTTGCTCGTGATTCTCCAAAAATGTTGTCGCAGT
CACGTCGATTCTCAAAATATACACTACTTTTGGAGGATCAGACATGCATCCGCCGATATTTTTAAGAGTCTGAGCAACATAGATCGAAAGGTGGCTATGA
GAAATTCAACTTCAACTTACCCTCCAGTTCTGAAGACTATAGAAGACTGCAGTGAATTCTTTGGGACCTGCTTCCATTTAAAAAAAAGGTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952637
Expected error %
0.06111
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g10300.2 Score 95 E Value 2e-20 Identity 24.60% Align. Length 182bp (30.80%) Frame 1
68416.m01235 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g10300.3 Score 91 E Value 5e-19 Identity 24.30% Align. Length 176bp (29.78%) Frame 1
68416.m01236 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_850998.1| Score 95 E Value 1e-18 Identity 24.60% Align. Length 182bp (30.80%) Frame 1
calcium-binding EF hand family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB63845.1| Score 95 E Value 1e-18 Identity 27.00% Align. Length 173bp (29.27%) Frame 1
putative cysteine protease [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0116D09
Clone
Clone name
hba-116d9
LE_HBa0116D09
P116D09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found