Clone Read LE_HBa0107L02_SP6_299866

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0107L02_SP6_299866
Primer
SP6
ID from Seq. Facility
LE_HBa_107_L02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
602 trimmed for vector and quality, 832 raw
Genbank Accession
DU090193
Sequence
>LE_HBa0107L02_SP6_299866 (raw untrimmed)
TTTTTCCGATGTTGGGTGCTGCTACTCTGTCGATTTGTCAAGGATTCTCTTCTATTTCTTCCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGT
ATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTT
TATTGTGATGCATCCTATTCTGGTTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGGCAACTAATGGTGCATGAACGTAACT
ATCCGACCCACGATTGGAATTGGCTGCGGTGGTGTTTGCATTAAAGCAATGGAGACACAATTTATATGGGGTTAAGTGTGAGATCTATAAAGATCATCGT
AGCCTACAGTATGTCTTTACTCAGAAAGATTTGAACTTGAGACAGAGGAGATGGATGGAACTACTGAAAGACTACGACATCACTATCTTGTATCATTCAG
GAAAAGCGAATGTTGTAGCGGATGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGATGCCCATTGGCTAGAGAGGT
TCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTGTGTGGAGGTATGATCTTCCTTTCTTGACAAGATTAAG
GGAAAACTGTTTTGATGACAGGAAACTAAGATGAAATCCCATCTTAGGTTTTGCTAAAAAAAGGCTAAAGGAACCCCAAATTCTATGAAGGAAAGGTGTC
TTTAGAAATTCAGGCAAAGGGCATTGTTTACC
>LE_HBa0107L02_SP6_299866 (trimmed for quality and cloning vector)
TCGATTTGTCAAGGATTCTCTTCTATTTCTTCCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTC
AGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGTTTGGG
TGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGGCAACTAATGGTGCATGAACGTAACTATCCGACCCACGATTGGAATTGGCTGCGG
TGGTGTTTGCATTAAAGCAATGGAGACACAATTTATATGGGGTTAAGTGTGAGATCTATAAAGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGA
TTTGAACTTGAGACAGAGGAGATGGATGGAACTACTGAAAGACTACGACATCACTATCTTGTATCATTCAGGAAAAGCGAATGTTGTAGCGGATGCTTTA
AGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGATGCCCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGACTTGATGAGAT
TA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.97305
Expected error %
0.0616879
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 162 E Value 3e-65 Identity 74.50% Align. Length 592bp (98.34%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 162 E Value 6e-65 Identity 74.50% Align. Length 592bp (98.34%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0107L02
Clone
Clone name
hba-107l2
LE_HBa0107L02
P107L02
Clone type
BAC
Contamination
none
Estimated length
83,431
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found